Strain Fitness in Marinobacter adhaerens HP15 around HP15_1828

Experiment: monoculture; Experiment B, time point 5

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_1827 and HP15_1828 overlap by 20 nucleotidesHP15_1828 and HP15_1829 overlap by 4 nucleotides HP15_1827: HP15_1827 - tryptophan synthase, beta subunit, at 1,923,987 to 1,925,207 _1827 HP15_1828: HP15_1828 - phosphoribosylanthranilate isomerase, at 1,925,188 to 1,925,817 _1828 HP15_1829: HP15_1829 - tRNA pseudouridine synthase A, at 1,925,814 to 1,926,722 _1829 Position (kb) 1925 1926Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1925.326 kb on - strand, within HP15_1828at 1925.350 kb on - strand, within HP15_1828at 1925.488 kb on - strand, within HP15_1828at 1925.760 kb on - strandat 1925.929 kb on - strand, within HP15_1829at 1926.345 kb on - strand, within HP15_1829at 1926.435 kb on + strand, within HP15_1829at 1926.537 kb on + strand, within HP15_1829at 1926.563 kb on - strand, within HP15_1829

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 5
remove
1,925,326 - HP15_1828 0.22 -1.4
1,925,350 - HP15_1828 0.26 -2.2
1,925,488 - HP15_1828 0.48 -3.5
1,925,760 - -3.2
1,925,929 - HP15_1829 0.13 -1.5
1,926,345 - HP15_1829 0.58 +2.7
1,926,435 + HP15_1829 0.68 +3.2
1,926,537 + HP15_1829 0.80 +0.4
1,926,563 - HP15_1829 0.82 +2.0

Or see this region's nucleotide sequence