Strain Fitness in Marinobacter adhaerens HP15 around HP15_178

Experiment: monoculture; Experiment B, time point 5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_175 and HP15_176 are separated by 175 nucleotidesHP15_176 and HP15_178 are separated by 24 nucleotidesHP15_178 and HP15_177 overlap by 18 nucleotidesHP15_177 and HP15_179 are separated by 104 nucleotidesHP15_179 and HP15_180 overlap by 7 nucleotides HP15_175: HP15_175 - conserved hypothetical protein, at 166,745 to 167,203 _175 HP15_176: HP15_176 - uncharacterized conserved protein, at 167,379 to 167,765 _176 HP15_178: HP15_178 - copper-translocating P-type ATPase, at 167,790 to 170,063 _178 HP15_177: HP15_177 - hypothetical protein, at 170,046 to 170,189 _177 HP15_179: HP15_179 - hypothetical protein, at 170,294 to 170,401 _179 HP15_180: HP15_180 - amino acid transporter, at 170,395 to 171,747 _180 Position (kb) 167 168 169 170 171Strain fitness (log2 ratio) -2 -1 0 1 2 3at 166.881 kb on - strand, within HP15_175at 166.911 kb on - strand, within HP15_175at 166.943 kb on - strand, within HP15_175at 166.945 kb on + strand, within HP15_175at 166.988 kb on + strand, within HP15_175at 166.996 kb on + strand, within HP15_175at 166.996 kb on - strand, within HP15_175at 167.004 kb on - strand, within HP15_175at 167.008 kb on - strand, within HP15_175at 167.011 kb on + strand, within HP15_175at 167.149 kb on - strand, within HP15_175at 167.189 kb on + strandat 167.190 kb on - strandat 167.301 kb on + strandat 167.315 kb on - strandat 167.320 kb on - strandat 167.404 kb on - strandat 167.410 kb on + strandat 167.410 kb on + strandat 167.410 kb on + strandat 167.410 kb on + strandat 167.411 kb on - strandat 167.418 kb on - strand, within HP15_176at 167.418 kb on - strand, within HP15_176at 167.418 kb on - strand, within HP15_176at 167.440 kb on - strand, within HP15_176at 167.489 kb on + strand, within HP15_176at 167.489 kb on + strand, within HP15_176at 167.489 kb on + strand, within HP15_176at 167.489 kb on + strand, within HP15_176at 167.489 kb on + strand, within HP15_176at 167.489 kb on + strand, within HP15_176at 167.497 kb on - strand, within HP15_176at 167.497 kb on - strand, within HP15_176at 167.500 kb on + strand, within HP15_176at 167.582 kb on - strand, within HP15_176at 167.614 kb on + strand, within HP15_176at 167.615 kb on + strand, within HP15_176at 167.679 kb on + strand, within HP15_176at 167.694 kb on + strand, within HP15_176at 167.694 kb on + strand, within HP15_176at 167.707 kb on + strand, within HP15_176at 167.707 kb on + strand, within HP15_176at 167.763 kb on - strandat 167.795 kb on + strandat 167.858 kb on + strandat 168.024 kb on + strand, within HP15_178at 168.037 kb on + strand, within HP15_178at 168.074 kb on + strand, within HP15_178at 168.185 kb on + strand, within HP15_178at 168.371 kb on + strand, within HP15_178at 168.434 kb on - strand, within HP15_178at 168.531 kb on + strand, within HP15_178at 168.586 kb on + strand, within HP15_178at 168.592 kb on + strand, within HP15_178at 168.601 kb on + strand, within HP15_178at 168.741 kb on - strand, within HP15_178at 168.770 kb on - strand, within HP15_178at 168.804 kb on + strand, within HP15_178at 168.812 kb on - strand, within HP15_178at 168.812 kb on - strand, within HP15_178at 168.845 kb on - strand, within HP15_178at 168.879 kb on + strand, within HP15_178at 168.939 kb on + strand, within HP15_178at 169.030 kb on + strand, within HP15_178at 169.053 kb on + strand, within HP15_178at 169.063 kb on + strand, within HP15_178at 169.063 kb on + strand, within HP15_178at 169.071 kb on - strand, within HP15_178at 169.190 kb on + strand, within HP15_178at 169.194 kb on + strand, within HP15_178at 169.223 kb on - strand, within HP15_178at 169.250 kb on - strand, within HP15_178at 169.279 kb on + strand, within HP15_178at 169.280 kb on + strand, within HP15_178at 169.287 kb on - strand, within HP15_178at 169.301 kb on + strand, within HP15_178at 169.326 kb on - strand, within HP15_178at 169.344 kb on - strand, within HP15_178at 169.495 kb on + strand, within HP15_178at 169.503 kb on - strand, within HP15_178at 169.516 kb on - strand, within HP15_178at 169.520 kb on + strand, within HP15_178at 169.536 kb on - strand, within HP15_178at 169.536 kb on - strand, within HP15_178at 169.648 kb on - strand, within HP15_178at 169.651 kb on + strand, within HP15_178at 169.687 kb on + strand, within HP15_178at 169.695 kb on - strand, within HP15_178at 169.695 kb on - strand, within HP15_178at 169.747 kb on + strand, within HP15_178at 169.751 kb on + strand, within HP15_178at 169.754 kb on - strand, within HP15_178at 169.782 kb on + strand, within HP15_178at 169.821 kb on - strand, within HP15_178at 169.835 kb on + strand, within HP15_178at 169.899 kb on + strandat 169.899 kb on + strandat 169.899 kb on + strandat 169.899 kb on + strandat 169.907 kb on - strandat 169.907 kb on - strandat 169.907 kb on - strandat 169.907 kb on - strandat 169.907 kb on - strandat 169.907 kb on - strandat 170.037 kb on - strandat 170.138 kb on - strand, within HP15_177at 170.159 kb on - strand, within HP15_177at 170.231 kb on - strandat 170.246 kb on + strandat 170.592 kb on + strand, within HP15_180at 170.600 kb on - strand, within HP15_180at 170.644 kb on - strand, within HP15_180at 170.653 kb on + strand, within HP15_180at 170.708 kb on - strand, within HP15_180at 170.718 kb on + strand, within HP15_180at 170.718 kb on + strand, within HP15_180at 170.718 kb on + strand, within HP15_180at 170.723 kb on + strand, within HP15_180at 170.726 kb on - strand, within HP15_180at 170.733 kb on - strand, within HP15_180at 170.738 kb on + strand, within HP15_180at 170.738 kb on + strand, within HP15_180at 170.738 kb on - strand, within HP15_180at 170.746 kb on - strand, within HP15_180at 170.746 kb on - strand, within HP15_180at 170.792 kb on - strand, within HP15_180at 171.008 kb on + strand, within HP15_180at 171.056 kb on + strand, within HP15_180

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 5
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166,881 - HP15_175 0.30 +1.9
166,911 - HP15_175 0.36 -0.2
166,943 - HP15_175 0.43 -0.5
166,945 + HP15_175 0.44 -1.3
166,988 + HP15_175 0.53 +0.2
166,996 + HP15_175 0.55 -1.0
166,996 - HP15_175 0.55 +1.2
167,004 - HP15_175 0.56 +3.0
167,008 - HP15_175 0.57 -0.2
167,011 + HP15_175 0.58 +0.0
167,149 - HP15_175 0.88 -0.7
167,189 + -0.5
167,190 - -0.3
167,301 + +0.1
167,315 - +2.2
167,320 - -0.0
167,404 - +1.2
167,410 + +1.2
167,410 + -0.7
167,410 + -0.6
167,410 + +0.5
167,411 - +1.7
167,418 - HP15_176 0.10 +1.8
167,418 - HP15_176 0.10 -0.1
167,418 - HP15_176 0.10 -1.3
167,440 - HP15_176 0.16 -0.5
167,489 + HP15_176 0.28 -0.5
167,489 + HP15_176 0.28 +1.3
167,489 + HP15_176 0.28 -0.5
167,489 + HP15_176 0.28 +1.7
167,489 + HP15_176 0.28 -0.1
167,489 + HP15_176 0.28 +0.5
167,497 - HP15_176 0.30 -0.1
167,497 - HP15_176 0.30 -1.0
167,500 + HP15_176 0.31 +0.2
167,582 - HP15_176 0.52 +1.8
167,614 + HP15_176 0.61 -0.7
167,615 + HP15_176 0.61 -0.6
167,679 + HP15_176 0.78 -1.0
167,694 + HP15_176 0.81 -2.6
167,694 + HP15_176 0.81 -0.5
167,707 + HP15_176 0.85 -0.9
167,707 + HP15_176 0.85 +2.1
167,763 - +1.8
167,795 + +1.7
167,858 + +0.2
168,024 + HP15_178 0.10 +1.6
168,037 + HP15_178 0.11 -0.9
168,074 + HP15_178 0.12 +0.1
168,185 + HP15_178 0.17 +0.4
168,371 + HP15_178 0.26 -1.4
168,434 - HP15_178 0.28 -0.8
168,531 + HP15_178 0.33 -2.2
168,586 + HP15_178 0.35 -1.1
168,592 + HP15_178 0.35 +0.4
168,601 + HP15_178 0.36 +1.0
168,741 - HP15_178 0.42 -0.0
168,770 - HP15_178 0.43 -0.6
168,804 + HP15_178 0.45 +0.5
168,812 - HP15_178 0.45 -1.4
168,812 - HP15_178 0.45 -0.3
168,845 - HP15_178 0.46 -1.5
168,879 + HP15_178 0.48 -1.3
168,939 + HP15_178 0.51 -0.2
169,030 + HP15_178 0.55 +2.2
169,053 + HP15_178 0.56 +1.9
169,063 + HP15_178 0.56 +1.4
169,063 + HP15_178 0.56 +1.8
169,071 - HP15_178 0.56 +1.2
169,190 + HP15_178 0.62 +1.9
169,194 + HP15_178 0.62 +0.0
169,223 - HP15_178 0.63 +0.2
169,250 - HP15_178 0.64 +3.0
169,279 + HP15_178 0.65 +1.9
169,280 + HP15_178 0.66 -0.5
169,287 - HP15_178 0.66 +0.9
169,301 + HP15_178 0.66 -0.2
169,326 - HP15_178 0.68 -1.8
169,344 - HP15_178 0.68 -0.5
169,495 + HP15_178 0.75 -1.9
169,503 - HP15_178 0.75 +2.1
169,516 - HP15_178 0.76 +1.3
169,520 + HP15_178 0.76 -1.8
169,536 - HP15_178 0.77 -0.6
169,536 - HP15_178 0.77 -0.4
169,648 - HP15_178 0.82 -0.1
169,651 + HP15_178 0.82 -1.8
169,687 + HP15_178 0.83 +2.4
169,695 - HP15_178 0.84 +2.0
169,695 - HP15_178 0.84 -0.3
169,747 + HP15_178 0.86 -0.6
169,751 + HP15_178 0.86 +1.8
169,754 - HP15_178 0.86 +0.0
169,782 + HP15_178 0.88 +0.7
169,821 - HP15_178 0.89 -1.0
169,835 + HP15_178 0.90 -0.6
169,899 + -1.2
169,899 + +1.7
169,899 + -0.8
169,899 + -0.3
169,907 - +2.1
169,907 - +1.9
169,907 - +0.1
169,907 - +1.7
169,907 - -0.2
169,907 - +0.4
170,037 - +0.1
170,138 - HP15_177 0.64 +0.1
170,159 - HP15_177 0.78 +2.1
170,231 - +0.4
170,246 + +0.1
170,592 + HP15_180 0.15 -1.7
170,600 - HP15_180 0.15 -1.9
170,644 - HP15_180 0.18 +1.5
170,653 + HP15_180 0.19 +2.3
170,708 - HP15_180 0.23 -1.4
170,718 + HP15_180 0.24 -1.0
170,718 + HP15_180 0.24 -1.1
170,718 + HP15_180 0.24 +2.0
170,723 + HP15_180 0.24 -0.2
170,726 - HP15_180 0.24 +0.7
170,733 - HP15_180 0.25 -1.0
170,738 + HP15_180 0.25 +1.4
170,738 + HP15_180 0.25 +0.4
170,738 - HP15_180 0.25 +0.3
170,746 - HP15_180 0.26 -0.6
170,746 - HP15_180 0.26 -0.5
170,792 - HP15_180 0.29 +1.7
171,008 + HP15_180 0.45 -2.1
171,056 + HP15_180 0.49 -0.7

Or see this region's nucleotide sequence