Experiment: monoculture; Experiment B, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1620 and HP15_1621 are separated by 15 nucleotides HP15_1621 and HP15_1622 are separated by 100 nucleotides
HP15_1620: HP15_1620 - flavin-containing monooxygenase FMO, at 1,716,453 to 1,718,018
_1620
HP15_1621: HP15_1621 - transcriptional regulator, LysR family protein, at 1,718,034 to 1,718,945
_1621
HP15_1622: HP15_1622 - NADH dehydrogenase subunit L, at 1,719,046 to 1,720,665
_1622
Position (kb)
1718
1719 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1717.305 kb on + strand, within HP15_1620 at 1717.305 kb on + strand, within HP15_1620 at 1717.311 kb on + strand, within HP15_1620 at 1717.414 kb on - strand, within HP15_1620 at 1717.486 kb on + strand, within HP15_1620 at 1717.494 kb on - strand, within HP15_1620 at 1717.494 kb on - strand, within HP15_1620 at 1717.528 kb on - strand, within HP15_1620 at 1717.678 kb on - strand, within HP15_1620 at 1717.780 kb on + strand, within HP15_1620 at 1717.878 kb on - strand at 1717.936 kb on - strand at 1718.137 kb on + strand, within HP15_1621 at 1718.145 kb on - strand, within HP15_1621 at 1718.145 kb on - strand, within HP15_1621 at 1718.155 kb on - strand, within HP15_1621 at 1718.177 kb on + strand, within HP15_1621 at 1718.316 kb on - strand, within HP15_1621 at 1718.419 kb on - strand, within HP15_1621 at 1718.511 kb on + strand, within HP15_1621 at 1718.511 kb on + strand, within HP15_1621 at 1718.530 kb on + strand, within HP15_1621 at 1718.579 kb on + strand, within HP15_1621 at 1718.663 kb on - strand, within HP15_1621 at 1718.779 kb on - strand, within HP15_1621 at 1719.158 kb on + strand at 1719.195 kb on + strand at 1719.279 kb on - strand, within HP15_1622 at 1719.308 kb on - strand, within HP15_1622 at 1719.364 kb on - strand, within HP15_1622 at 1719.422 kb on + strand, within HP15_1622 at 1719.500 kb on + strand, within HP15_1622 at 1719.506 kb on + strand, within HP15_1622 at 1719.530 kb on + strand, within HP15_1622 at 1719.611 kb on + strand, within HP15_1622 at 1719.611 kb on + strand, within HP15_1622 at 1719.655 kb on - strand, within HP15_1622 at 1719.657 kb on + strand, within HP15_1622 at 1719.672 kb on + strand, within HP15_1622 at 1719.771 kb on + strand, within HP15_1622 at 1719.817 kb on - strand, within HP15_1622 at 1719.817 kb on - strand, within HP15_1622 at 1719.827 kb on - strand, within HP15_1622
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 5 remove 1,717,305 + HP15_1620 0.54 -1.4 1,717,305 + HP15_1620 0.54 +0.1 1,717,311 + HP15_1620 0.55 -0.7 1,717,414 - HP15_1620 0.61 -0.5 1,717,486 + HP15_1620 0.66 +1.7 1,717,494 - HP15_1620 0.66 +2.2 1,717,494 - HP15_1620 0.66 +0.8 1,717,528 - HP15_1620 0.69 +1.3 1,717,678 - HP15_1620 0.78 -1.8 1,717,780 + HP15_1620 0.85 +2.1 1,717,878 - -0.0 1,717,936 - +2.4 1,718,137 + HP15_1621 0.11 -0.1 1,718,145 - HP15_1621 0.12 +0.9 1,718,145 - HP15_1621 0.12 +0.1 1,718,155 - HP15_1621 0.13 -0.4 1,718,177 + HP15_1621 0.16 +0.2 1,718,316 - HP15_1621 0.31 +0.1 1,718,419 - HP15_1621 0.42 -0.5 1,718,511 + HP15_1621 0.52 +1.3 1,718,511 + HP15_1621 0.52 -0.0 1,718,530 + HP15_1621 0.54 -0.4 1,718,579 + HP15_1621 0.60 -0.5 1,718,663 - HP15_1621 0.69 +1.6 1,718,779 - HP15_1621 0.82 -0.9 1,719,158 + +1.2 1,719,195 + -0.3 1,719,279 - HP15_1622 0.14 -0.1 1,719,308 - HP15_1622 0.16 -1.3 1,719,364 - HP15_1622 0.20 +2.2 1,719,422 + HP15_1622 0.23 +1.8 1,719,500 + HP15_1622 0.28 +3.2 1,719,506 + HP15_1622 0.28 -0.3 1,719,530 + HP15_1622 0.30 -0.6 1,719,611 + HP15_1622 0.35 -0.2 1,719,611 + HP15_1622 0.35 -1.7 1,719,655 - HP15_1622 0.38 -0.1 1,719,657 + HP15_1622 0.38 +1.3 1,719,672 + HP15_1622 0.39 +1.8 1,719,771 + HP15_1622 0.45 -0.1 1,719,817 - HP15_1622 0.48 -0.1 1,719,817 - HP15_1622 0.48 -2.0 1,719,827 - HP15_1622 0.48 -0.9
Or see this region's nucleotide sequence