Strain Fitness in Marinobacter adhaerens HP15 around HP15_1608
Experiment: monoculture; Experiment B, time point 5
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | monoculture; Experiment B, time point 5 |
---|---|---|---|---|---|
remove | |||||
1,702,883 | + | HP15_1606 | 0.61 | +0.8 | |
1,703,335 | - | HP15_1607 | 0.35 | +0.6 | |
1,703,374 | - | HP15_1607 | 0.40 | -1.3 | |
1,703,394 | - | HP15_1607 | 0.43 | -1.1 | |
1,703,649 | + | HP15_1607 | 0.78 | +0.3 | |
1,703,690 | + | HP15_1607 | 0.84 | +0.5 | |
1,703,762 | - | -1.9 | |||
1,703,819 | + | +2.2 | |||
1,704,070 | + | HP15_1608 | 0.26 | -1.1 | |
1,704,078 | - | HP15_1608 | 0.27 | +0.4 | |
1,704,078 | - | HP15_1608 | 0.27 | -1.6 | |
1,704,147 | - | HP15_1608 | 0.34 | +1.2 | |
1,704,351 | - | HP15_1608 | 0.54 | +1.9 | |
1,704,537 | - | HP15_1608 | 0.72 | -1.1 | |
1,704,563 | + | HP15_1608 | 0.75 | -0.5 | |
1,704,873 | - | -0.3 | |||
1,704,995 | - | HP15_1609 | 0.14 | +1.4 | |
1,705,007 | + | HP15_1609 | 0.15 | -0.7 | |
1,705,007 | + | HP15_1609 | 0.15 | -2.2 | |
1,705,015 | - | HP15_1609 | 0.15 | -2.5 | |
1,705,094 | - | HP15_1609 | 0.21 | +0.6 | |
1,705,408 | - | HP15_1609 | 0.45 | +0.0 | |
1,705,504 | - | HP15_1609 | 0.53 | -0.6 | |
1,705,638 | + | HP15_1609 | 0.63 | -0.2 |
Or see this region's nucleotide sequence