Strain Fitness in Marinobacter adhaerens HP15 around HP15_1505

Experiment: monoculture; Experiment B, time point 5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1503 and HP15_1504 are separated by 53 nucleotidesHP15_1504 and HP15_1505 are separated by 103 nucleotidesHP15_1505 and HP15_1506 are separated by 145 nucleotides HP15_1503: HP15_1503 - nucleoside-diphosphate sugar epimerase, at 1,579,904 to 1,580,830 _1503 HP15_1504: HP15_1504 - cobalamin (vitamin B12) biosynthesis CbiX protein, at 1,580,884 to 1,581,258 _1504 HP15_1505: HP15_1505 - protein containing DUF924, bacterial, at 1,581,362 to 1,581,964 _1505 HP15_1506: HP15_1506 - secreted protein containing YkuD domain, at 1,582,110 to 1,583,147 _1506 HP15_tRNA29: HP15_tRNA29 - tRNA-Gly, at 1,582,884 to 1,582,959 _tRNA29 Position (kb) 1581 1582Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1580.540 kb on - strand, within HP15_1503at 1580.600 kb on + strand, within HP15_1503at 1580.839 kb on + strandat 1580.867 kb on + strandat 1581.132 kb on + strand, within HP15_1504at 1581.466 kb on - strand, within HP15_1505at 1581.473 kb on - strandat 1581.665 kb on - strand, within HP15_1505at 1581.674 kb on + strand, within HP15_1505at 1581.739 kb on + strand, within HP15_1505at 1581.754 kb on + strand, within HP15_1505at 1581.798 kb on + strand, within HP15_1505at 1581.959 kb on + strandat 1581.959 kb on - strandat 1581.969 kb on + strandat 1582.287 kb on + strand, within HP15_1506at 1582.295 kb on - strand, within HP15_1506at 1582.473 kb on - strand, within HP15_1506at 1582.480 kb on + strand, within HP15_1506at 1582.483 kb on - strand, within HP15_1506at 1582.483 kb on - strand, within HP15_1506at 1582.483 kb on - strand, within HP15_1506at 1582.656 kb on - strand, within HP15_1506at 1582.725 kb on - strand, within HP15_1506at 1582.746 kb on - strand, within HP15_1506

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 5
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1,580,540 - HP15_1503 0.69 +1.7
1,580,600 + HP15_1503 0.75 +1.4
1,580,839 + +0.0
1,580,867 + -1.5
1,581,132 + HP15_1504 0.66 -4.3
1,581,466 - HP15_1505 0.17 -0.2
1,581,473 - -0.8
1,581,665 - HP15_1505 0.50 -0.7
1,581,674 + HP15_1505 0.52 +0.3
1,581,739 + HP15_1505 0.63 -1.5
1,581,754 + HP15_1505 0.65 +0.4
1,581,798 + HP15_1505 0.72 +1.9
1,581,959 + +0.4
1,581,959 - +1.9
1,581,969 + -2.6
1,582,287 + HP15_1506 0.17 +0.7
1,582,295 - HP15_1506 0.18 +1.4
1,582,473 - HP15_1506 0.35 +0.3
1,582,480 + HP15_1506 0.36 -0.2
1,582,483 - HP15_1506 0.36 -1.2
1,582,483 - HP15_1506 0.36 -0.5
1,582,483 - HP15_1506 0.36 +1.7
1,582,656 - HP15_1506 0.53 -0.1
1,582,725 - HP15_1506 0.59 +0.2
1,582,746 - HP15_1506 0.61 +0.1

Or see this region's nucleotide sequence