Experiment: monoculture; Experiment B, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1484 and HP15_1485 overlap by 8 nucleotides HP15_1485 and HP15_1486 are separated by 21 nucleotides HP15_1486 and HP15_1487 overlap by 21 nucleotides HP15_1487 and HP15_1488 are separated by 22 nucleotides
HP15_1484: HP15_1484 - RNA methyltransferase, TrmH family, group 1, at 1,560,703 to 1,561,566
_1484
HP15_1485: HP15_1485 - serine O-acetyltransferase, at 1,561,559 to 1,562,332
_1485
HP15_1486: HP15_1486 - hypothetical protein, at 1,562,354 to 1,562,470
_1486
HP15_1487: HP15_1487 - transcriptional regulator, BadM/Rrf2 family, at 1,562,450 to 1,562,908
_1487
HP15_1488: HP15_1488 - cysteine desulfurase IscS, at 1,562,931 to 1,564,079
_1488
Position (kb) 1562
1563 Strain fitness (log2 ratio) -1
0
1 at 1561.470 kb on + strand, within HP15_1484 at 1561.543 kb on + strand at 1561.548 kb on + strand at 1562.313 kb on + strand at 1562.727 kb on + strand, within HP15_1487 at 1562.734 kb on + strand, within HP15_1487 at 1562.739 kb on + strand, within HP15_1487
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 5 remove 1,561,470 + HP15_1484 0.89 -0.2 1,561,543 + -0.7 1,561,548 + -0.4 1,562,313 + -0.5 1,562,727 + HP15_1487 0.60 -0.3 1,562,734 + HP15_1487 0.62 -0.8 1,562,739 + HP15_1487 0.63 -0.7
Or see this region's nucleotide sequence