Experiment: monoculture; Experiment B, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1448 and HP15_1449 are separated by 48 nucleotides HP15_1449 and HP15_1450 are separated by 9 nucleotides HP15_1450 and HP15_1451 are separated by 66 nucleotides
HP15_1448: HP15_1448 - conserved hypothetical protein, secreted, at 1,524,284 to 1,525,135
_1448
HP15_1449: HP15_1449 - ABC transporter, ATP-binding protein, at 1,525,184 to 1,525,978
_1449
HP15_1450: HP15_1450 - inner-membrane translocator, at 1,525,988 to 1,526,890
_1450
HP15_1451: HP15_1451 - ABC-type uncharacterized transport system, periplasmic component, at 1,526,957 to 1,527,931
_1451
Position (kb)
1525
1526 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1524.233 kb on - strand at 1524.407 kb on - strand, within HP15_1448 at 1524.445 kb on + strand, within HP15_1448 at 1524.493 kb on - strand, within HP15_1448 at 1524.558 kb on + strand, within HP15_1448 at 1524.566 kb on - strand, within HP15_1448 at 1524.589 kb on - strand, within HP15_1448 at 1524.647 kb on - strand, within HP15_1448 at 1524.655 kb on + strand, within HP15_1448 at 1524.713 kb on - strand, within HP15_1448 at 1524.876 kb on - strand, within HP15_1448 at 1524.914 kb on - strand, within HP15_1448 at 1524.933 kb on + strand, within HP15_1448 at 1525.047 kb on + strand, within HP15_1448 at 1525.062 kb on - strand at 1525.114 kb on + strand at 1525.120 kb on + strand at 1525.128 kb on - strand at 1525.128 kb on - strand at 1525.168 kb on - strand at 1525.213 kb on + strand at 1525.258 kb on + strand at 1525.266 kb on - strand, within HP15_1449 at 1525.323 kb on - strand, within HP15_1449 at 1525.439 kb on - strand, within HP15_1449 at 1525.525 kb on - strand, within HP15_1449 at 1525.537 kb on + strand, within HP15_1449 at 1525.626 kb on + strand, within HP15_1449 at 1525.771 kb on + strand, within HP15_1449 at 1525.779 kb on - strand, within HP15_1449 at 1525.896 kb on - strand, within HP15_1449 at 1526.026 kb on + strand at 1526.053 kb on + strand at 1526.190 kb on - strand, within HP15_1450 at 1526.230 kb on + strand, within HP15_1450 at 1526.276 kb on - strand, within HP15_1450 at 1526.316 kb on - strand, within HP15_1450 at 1526.506 kb on + strand, within HP15_1450 at 1526.594 kb on - strand, within HP15_1450 at 1526.611 kb on + strand, within HP15_1450 at 1526.725 kb on + strand, within HP15_1450 at 1526.838 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 5 remove 1,524,233 - +1.0 1,524,407 - HP15_1448 0.14 +0.6 1,524,445 + HP15_1448 0.19 -0.7 1,524,493 - HP15_1448 0.25 +1.8 1,524,558 + HP15_1448 0.32 +2.0 1,524,566 - HP15_1448 0.33 +0.9 1,524,589 - HP15_1448 0.36 +1.9 1,524,647 - HP15_1448 0.43 -0.7 1,524,655 + HP15_1448 0.44 +0.1 1,524,713 - HP15_1448 0.50 +0.7 1,524,876 - HP15_1448 0.69 -0.7 1,524,914 - HP15_1448 0.74 +1.1 1,524,933 + HP15_1448 0.76 +0.0 1,525,047 + HP15_1448 0.90 -0.3 1,525,062 - -0.6 1,525,114 + -3.4 1,525,120 + +1.8 1,525,128 - +0.8 1,525,128 - +1.0 1,525,168 - -0.1 1,525,213 + +2.3 1,525,258 + -0.3 1,525,266 - HP15_1449 0.10 -1.4 1,525,323 - HP15_1449 0.17 +1.7 1,525,439 - HP15_1449 0.32 +2.8 1,525,525 - HP15_1449 0.43 +3.5 1,525,537 + HP15_1449 0.44 +2.5 1,525,626 + HP15_1449 0.56 -0.7 1,525,771 + HP15_1449 0.74 -0.7 1,525,779 - HP15_1449 0.75 -0.6 1,525,896 - HP15_1449 0.90 -0.1 1,526,026 + +0.8 1,526,053 + +1.9 1,526,190 - HP15_1450 0.22 +1.2 1,526,230 + HP15_1450 0.27 -0.1 1,526,276 - HP15_1450 0.32 -0.2 1,526,316 - HP15_1450 0.36 -0.1 1,526,506 + HP15_1450 0.57 +1.8 1,526,594 - HP15_1450 0.67 -0.1 1,526,611 + HP15_1450 0.69 +2.0 1,526,725 + HP15_1450 0.82 -1.4 1,526,838 + +1.9
Or see this region's nucleotide sequence