Strain Fitness in Marinobacter adhaerens HP15 around HP15_1449

Experiment: monoculture; Experiment B, time point 5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1448 and HP15_1449 are separated by 48 nucleotidesHP15_1449 and HP15_1450 are separated by 9 nucleotidesHP15_1450 and HP15_1451 are separated by 66 nucleotides HP15_1448: HP15_1448 - conserved hypothetical protein, secreted, at 1,524,284 to 1,525,135 _1448 HP15_1449: HP15_1449 - ABC transporter, ATP-binding protein, at 1,525,184 to 1,525,978 _1449 HP15_1450: HP15_1450 - inner-membrane translocator, at 1,525,988 to 1,526,890 _1450 HP15_1451: HP15_1451 - ABC-type uncharacterized transport system, periplasmic component, at 1,526,957 to 1,527,931 _1451 Position (kb) 1525 1526Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1524.233 kb on - strandat 1524.407 kb on - strand, within HP15_1448at 1524.445 kb on + strand, within HP15_1448at 1524.493 kb on - strand, within HP15_1448at 1524.558 kb on + strand, within HP15_1448at 1524.566 kb on - strand, within HP15_1448at 1524.589 kb on - strand, within HP15_1448at 1524.647 kb on - strand, within HP15_1448at 1524.655 kb on + strand, within HP15_1448at 1524.713 kb on - strand, within HP15_1448at 1524.876 kb on - strand, within HP15_1448at 1524.914 kb on - strand, within HP15_1448at 1524.933 kb on + strand, within HP15_1448at 1525.047 kb on + strand, within HP15_1448at 1525.062 kb on - strandat 1525.114 kb on + strandat 1525.120 kb on + strandat 1525.128 kb on - strandat 1525.128 kb on - strandat 1525.168 kb on - strandat 1525.213 kb on + strandat 1525.258 kb on + strandat 1525.266 kb on - strand, within HP15_1449at 1525.323 kb on - strand, within HP15_1449at 1525.439 kb on - strand, within HP15_1449at 1525.525 kb on - strand, within HP15_1449at 1525.537 kb on + strand, within HP15_1449at 1525.626 kb on + strand, within HP15_1449at 1525.771 kb on + strand, within HP15_1449at 1525.779 kb on - strand, within HP15_1449at 1525.896 kb on - strand, within HP15_1449at 1526.026 kb on + strandat 1526.053 kb on + strandat 1526.190 kb on - strand, within HP15_1450at 1526.230 kb on + strand, within HP15_1450at 1526.276 kb on - strand, within HP15_1450at 1526.316 kb on - strand, within HP15_1450at 1526.506 kb on + strand, within HP15_1450at 1526.594 kb on - strand, within HP15_1450at 1526.611 kb on + strand, within HP15_1450at 1526.725 kb on + strand, within HP15_1450at 1526.838 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 5
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1,524,233 - +1.0
1,524,407 - HP15_1448 0.14 +0.6
1,524,445 + HP15_1448 0.19 -0.7
1,524,493 - HP15_1448 0.25 +1.8
1,524,558 + HP15_1448 0.32 +2.0
1,524,566 - HP15_1448 0.33 +0.9
1,524,589 - HP15_1448 0.36 +1.9
1,524,647 - HP15_1448 0.43 -0.7
1,524,655 + HP15_1448 0.44 +0.1
1,524,713 - HP15_1448 0.50 +0.7
1,524,876 - HP15_1448 0.69 -0.7
1,524,914 - HP15_1448 0.74 +1.1
1,524,933 + HP15_1448 0.76 +0.0
1,525,047 + HP15_1448 0.90 -0.3
1,525,062 - -0.6
1,525,114 + -3.4
1,525,120 + +1.8
1,525,128 - +0.8
1,525,128 - +1.0
1,525,168 - -0.1
1,525,213 + +2.3
1,525,258 + -0.3
1,525,266 - HP15_1449 0.10 -1.4
1,525,323 - HP15_1449 0.17 +1.7
1,525,439 - HP15_1449 0.32 +2.8
1,525,525 - HP15_1449 0.43 +3.5
1,525,537 + HP15_1449 0.44 +2.5
1,525,626 + HP15_1449 0.56 -0.7
1,525,771 + HP15_1449 0.74 -0.7
1,525,779 - HP15_1449 0.75 -0.6
1,525,896 - HP15_1449 0.90 -0.1
1,526,026 + +0.8
1,526,053 + +1.9
1,526,190 - HP15_1450 0.22 +1.2
1,526,230 + HP15_1450 0.27 -0.1
1,526,276 - HP15_1450 0.32 -0.2
1,526,316 - HP15_1450 0.36 -0.1
1,526,506 + HP15_1450 0.57 +1.8
1,526,594 - HP15_1450 0.67 -0.1
1,526,611 + HP15_1450 0.69 +2.0
1,526,725 + HP15_1450 0.82 -1.4
1,526,838 + +1.9

Or see this region's nucleotide sequence