Experiment: monoculture; Experiment B, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1325 and HP15_1326 are separated by 475 nucleotides HP15_1326 and HP15_1327 are separated by 84 nucleotides HP15_1327 and HP15_1328 are separated by 196 nucleotides
HP15_1325: HP15_1325 - methyl-accepting chemotaxis sensory transducer, at 1,388,626 to 1,390,566
_1325
HP15_1326: HP15_1326 - conserved hypothetical protein, at 1,391,042 to 1,392,823
_1326
HP15_1327: HP15_1327 - hypothetical protein, at 1,392,908 to 1,393,261
_1327
HP15_1328: HP15_1328 - nucleoprotein/polynucleotide-associated enzyme, at 1,393,458 to 1,393,994
_1328
Position (kb)
1391
1392
1393 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1390.115 kb on - strand, within HP15_1325 at 1390.166 kb on + strand, within HP15_1325 at 1390.204 kb on - strand, within HP15_1325 at 1390.240 kb on - strand, within HP15_1325 at 1390.635 kb on - strand at 1390.739 kb on - strand at 1390.741 kb on - strand at 1390.760 kb on - strand at 1390.853 kb on - strand at 1390.920 kb on - strand at 1391.062 kb on + strand at 1391.070 kb on - strand at 1391.096 kb on - strand at 1391.252 kb on + strand, within HP15_1326 at 1391.261 kb on - strand, within HP15_1326 at 1391.265 kb on + strand, within HP15_1326 at 1391.294 kb on - strand, within HP15_1326 at 1391.399 kb on + strand, within HP15_1326 at 1391.406 kb on - strand, within HP15_1326 at 1391.425 kb on + strand, within HP15_1326 at 1391.425 kb on + strand, within HP15_1326 at 1391.438 kb on - strand, within HP15_1326 at 1391.491 kb on + strand, within HP15_1326 at 1391.698 kb on + strand, within HP15_1326 at 1391.698 kb on + strand, within HP15_1326 at 1391.860 kb on + strand, within HP15_1326 at 1391.860 kb on + strand, within HP15_1326 at 1392.080 kb on + strand, within HP15_1326 at 1392.080 kb on + strand, within HP15_1326 at 1392.217 kb on - strand, within HP15_1326 at 1392.232 kb on - strand, within HP15_1326 at 1392.360 kb on + strand, within HP15_1326 at 1392.381 kb on + strand, within HP15_1326 at 1392.566 kb on + strand, within HP15_1326 at 1392.732 kb on + strand at 1392.806 kb on + strand at 1392.988 kb on + strand, within HP15_1327 at 1392.990 kb on + strand, within HP15_1327 at 1393.061 kb on + strand, within HP15_1327 at 1393.062 kb on - strand, within HP15_1327 at 1393.092 kb on - strand, within HP15_1327 at 1393.180 kb on - strand, within HP15_1327 at 1393.232 kb on - strand at 1393.445 kb on + strand at 1393.453 kb on - strand at 1393.577 kb on + strand, within HP15_1328 at 1393.733 kb on - strand, within HP15_1328
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 5 remove 1,390,115 - HP15_1325 0.77 +2.3 1,390,166 + HP15_1325 0.79 +2.1 1,390,204 - HP15_1325 0.81 -0.6 1,390,240 - HP15_1325 0.83 +0.8 1,390,635 - -0.5 1,390,739 - -0.5 1,390,741 - -2.3 1,390,760 - +0.1 1,390,853 - +2.1 1,390,920 - -0.8 1,391,062 + -0.2 1,391,070 - +0.1 1,391,096 - -0.7 1,391,252 + HP15_1326 0.12 -1.2 1,391,261 - HP15_1326 0.12 +0.1 1,391,265 + HP15_1326 0.13 +0.3 1,391,294 - HP15_1326 0.14 -0.7 1,391,399 + HP15_1326 0.20 +2.0 1,391,406 - HP15_1326 0.20 -0.0 1,391,425 + HP15_1326 0.21 -0.7 1,391,425 + HP15_1326 0.21 +0.8 1,391,438 - HP15_1326 0.22 +0.5 1,391,491 + HP15_1326 0.25 +0.1 1,391,698 + HP15_1326 0.37 -1.8 1,391,698 + HP15_1326 0.37 -0.5 1,391,860 + HP15_1326 0.46 +1.0 1,391,860 + HP15_1326 0.46 -1.2 1,392,080 + HP15_1326 0.58 +1.5 1,392,080 + HP15_1326 0.58 -0.6 1,392,217 - HP15_1326 0.66 -2.4 1,392,232 - HP15_1326 0.67 -0.4 1,392,360 + HP15_1326 0.74 +0.8 1,392,381 + HP15_1326 0.75 +1.1 1,392,566 + HP15_1326 0.86 -1.5 1,392,732 + +2.1 1,392,806 + +0.8 1,392,988 + HP15_1327 0.23 -1.7 1,392,990 + HP15_1327 0.23 +0.4 1,393,061 + HP15_1327 0.43 +2.3 1,393,062 - HP15_1327 0.44 -0.5 1,393,092 - HP15_1327 0.52 -0.7 1,393,180 - HP15_1327 0.77 +1.8 1,393,232 - -0.3 1,393,445 + -0.8 1,393,453 - -1.0 1,393,577 + HP15_1328 0.22 -0.2 1,393,733 - HP15_1328 0.51 -0.3
Or see this region's nucleotide sequence