Strain Fitness in Marinobacter adhaerens HP15 around HP15_129

Experiment: monoculture; Experiment B, time point 5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_126 and HP15_127 are separated by 27 nucleotidesHP15_127 and HP15_128 overlap by 14 nucleotidesHP15_128 and HP15_129 are separated by 57 nucleotidesHP15_129 and HP15_130 are separated by 104 nucleotidesHP15_130 and HP15_131 are separated by 71 nucleotides HP15_126: HP15_126 - single-strand DNA-binding protein, at 134,682 to 135,080 _126 HP15_127: HP15_127 - hypothetical protein, at 135,108 to 135,353 _127 HP15_128: HP15_128 - conserved hypothetical protein, at 135,340 to 135,660 _128 HP15_129: HP15_129 - RecT protein, at 135,718 to 136,674 _129 HP15_130: HP15_130 - conserved hypothetical protein, at 136,779 to 137,042 _130 HP15_131: HP15_131 - endonuclease-like phage-related protein, at 137,114 to 138,118 _131 Position (kb) 135 136 137Strain fitness (log2 ratio) -2 -1 0 1 2 3at 134.733 kb on + strand, within HP15_126at 134.791 kb on - strand, within HP15_126at 134.791 kb on - strand, within HP15_126at 134.820 kb on - strand, within HP15_126at 134.881 kb on + strand, within HP15_126at 134.896 kb on - strand, within HP15_126at 134.939 kb on - strand, within HP15_126at 134.986 kb on + strand, within HP15_126at 135.096 kb on + strandat 135.216 kb on - strand, within HP15_127at 135.278 kb on + strand, within HP15_127at 135.399 kb on + strand, within HP15_128at 135.402 kb on - strand, within HP15_128at 135.435 kb on + strand, within HP15_128at 135.435 kb on + strand, within HP15_128at 135.504 kb on + strand, within HP15_128at 135.505 kb on - strand, within HP15_128at 135.526 kb on + strand, within HP15_128at 135.559 kb on - strand, within HP15_128at 135.569 kb on + strand, within HP15_128at 135.577 kb on - strand, within HP15_128at 135.633 kb on - strandat 135.641 kb on - strandat 135.662 kb on + strandat 135.720 kb on - strandat 135.739 kb on + strandat 135.757 kb on + strandat 135.757 kb on + strandat 135.851 kb on + strand, within HP15_129at 135.909 kb on - strand, within HP15_129at 135.993 kb on + strand, within HP15_129at 136.067 kb on - strand, within HP15_129at 136.129 kb on + strand, within HP15_129at 136.148 kb on + strand, within HP15_129at 136.404 kb on + strand, within HP15_129at 136.409 kb on + strand, within HP15_129at 136.501 kb on + strand, within HP15_129at 136.501 kb on - strand, within HP15_129at 136.506 kb on - strand, within HP15_129at 136.509 kb on - strand, within HP15_129at 136.509 kb on - strand, within HP15_129at 136.511 kb on - strand, within HP15_129at 136.511 kb on - strand, within HP15_129at 136.511 kb on - strand, within HP15_129at 136.600 kb on + strandat 136.605 kb on + strandat 136.613 kb on - strandat 136.615 kb on - strandat 136.626 kb on + strandat 136.646 kb on - strandat 136.651 kb on - strandat 136.656 kb on - strandat 136.676 kb on + strandat 136.693 kb on - strandat 136.706 kb on - strandat 136.803 kb on - strandat 136.814 kb on + strand, within HP15_130at 136.860 kb on + strand, within HP15_130at 136.865 kb on - strand, within HP15_130at 136.981 kb on + strand, within HP15_130at 136.991 kb on + strand, within HP15_130at 136.999 kb on - strand, within HP15_130at 137.009 kb on - strand, within HP15_130at 137.027 kb on + strandat 137.029 kb on + strandat 137.035 kb on - strandat 137.038 kb on + strandat 137.095 kb on - strandat 137.096 kb on + strandat 137.130 kb on + strandat 137.169 kb on + strandat 137.208 kb on + strandat 137.208 kb on + strandat 137.208 kb on + strandat 137.208 kb on + strandat 137.208 kb on + strandat 137.208 kb on + strandat 137.216 kb on - strand, within HP15_131at 137.216 kb on - strand, within HP15_131at 137.274 kb on - strand, within HP15_131at 137.289 kb on - strand, within HP15_131at 137.299 kb on + strand, within HP15_131at 137.423 kb on + strand, within HP15_131at 137.472 kb on - strand, within HP15_131at 137.472 kb on - strand, within HP15_131at 137.523 kb on - strand, within HP15_131at 137.536 kb on + strand, within HP15_131at 137.539 kb on - strand, within HP15_131at 137.591 kb on + strand, within HP15_131at 137.631 kb on + strand, within HP15_131

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 5
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134,733 + HP15_126 0.13 -2.5
134,791 - HP15_126 0.27 +1.9
134,791 - HP15_126 0.27 -0.4
134,820 - HP15_126 0.35 +0.3
134,881 + HP15_126 0.50 -0.4
134,896 - HP15_126 0.54 +2.2
134,939 - HP15_126 0.64 +0.2
134,986 + HP15_126 0.76 -0.9
135,096 + -0.9
135,216 - HP15_127 0.44 -1.2
135,278 + HP15_127 0.69 +0.9
135,399 + HP15_128 0.18 +2.7
135,402 - HP15_128 0.19 +1.5
135,435 + HP15_128 0.30 -0.1
135,435 + HP15_128 0.30 +3.1
135,504 + HP15_128 0.51 -1.2
135,505 - HP15_128 0.51 +1.0
135,526 + HP15_128 0.58 +0.9
135,559 - HP15_128 0.68 -1.4
135,569 + HP15_128 0.71 +2.4
135,577 - HP15_128 0.74 -0.4
135,633 - +2.0
135,641 - +1.9
135,662 + +0.9
135,720 - -0.3
135,739 + +0.5
135,757 + -0.4
135,757 + -0.6
135,851 + HP15_129 0.14 -0.0
135,909 - HP15_129 0.20 +1.4
135,993 + HP15_129 0.29 -0.1
136,067 - HP15_129 0.36 +1.5
136,129 + HP15_129 0.43 +1.9
136,148 + HP15_129 0.45 -0.6
136,404 + HP15_129 0.72 +2.0
136,409 + HP15_129 0.72 +1.3
136,501 + HP15_129 0.82 +2.4
136,501 - HP15_129 0.82 +1.7
136,506 - HP15_129 0.82 +1.5
136,509 - HP15_129 0.83 -1.8
136,509 - HP15_129 0.83 -1.3
136,511 - HP15_129 0.83 +0.4
136,511 - HP15_129 0.83 +1.5
136,511 - HP15_129 0.83 +1.8
136,600 + +1.0
136,605 + +1.5
136,613 - +1.6
136,615 - -1.1
136,626 + -0.3
136,646 - +1.5
136,651 - -0.3
136,656 - -1.0
136,676 + +0.7
136,693 - -1.4
136,706 - -1.3
136,803 - -0.6
136,814 + HP15_130 0.13 -0.5
136,860 + HP15_130 0.31 -0.3
136,865 - HP15_130 0.33 -0.9
136,981 + HP15_130 0.77 +0.5
136,991 + HP15_130 0.80 -0.9
136,999 - HP15_130 0.83 +0.4
137,009 - HP15_130 0.87 -1.2
137,027 + -0.1
137,029 + -2.5
137,035 - +1.5
137,038 + -0.5
137,095 - +0.0
137,096 + -1.1
137,130 + +1.1
137,169 + +1.6
137,208 + -1.2
137,208 + +2.2
137,208 + +2.3
137,208 + -1.2
137,208 + +1.0
137,208 + -1.1
137,216 - HP15_131 0.10 -0.6
137,216 - HP15_131 0.10 -1.0
137,274 - HP15_131 0.16 -1.5
137,289 - HP15_131 0.17 +1.5
137,299 + HP15_131 0.18 -0.3
137,423 + HP15_131 0.31 -0.4
137,472 - HP15_131 0.36 -0.0
137,472 - HP15_131 0.36 +0.7
137,523 - HP15_131 0.41 -0.7
137,536 + HP15_131 0.42 -1.0
137,539 - HP15_131 0.42 -2.0
137,591 + HP15_131 0.47 +1.4
137,631 + HP15_131 0.51 -0.6

Or see this region's nucleotide sequence