Experiment: monoculture; Experiment B, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1241 and HP15_1242 are separated by 97 nucleotides HP15_1242 and HP15_1243 are separated by 2 nucleotides HP15_1243 and HP15_1244 overlap by 4 nucleotides HP15_1244 and HP15_1245 are separated by 18 nucleotides
HP15_1241: HP15_1241 - ADP-ribose pyrophosphatase, at 1,295,134 to 1,295,685
_1241
HP15_1242: HP15_1242 - MutT/nudix family protein, at 1,295,783 to 1,296,370
_1242
HP15_1243: HP15_1243 - transferase hexapeptide repeat containing protein, at 1,296,373 to 1,296,906
_1243
HP15_1244: HP15_1244 - protein containing DUF1289, at 1,296,903 to 1,297,091
_1244
HP15_1245: HP15_1245 - phosphoribosylglycinamide formyltransferase 2, at 1,297,110 to 1,298,300
_1245
Position (kb) 1296
1297 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1295.409 kb on - strand, within HP15_1241 at 1295.498 kb on + strand, within HP15_1241 at 1295.626 kb on + strand, within HP15_1241 at 1295.677 kb on - strand at 1295.783 kb on - strand at 1295.814 kb on + strand at 1295.847 kb on - strand, within HP15_1242 at 1295.855 kb on + strand, within HP15_1242 at 1296.070 kb on + strand, within HP15_1242 at 1296.078 kb on - strand, within HP15_1242 at 1296.137 kb on - strand, within HP15_1242 at 1296.355 kb on + strand at 1296.363 kb on - strand at 1296.445 kb on + strand, within HP15_1243 at 1296.453 kb on - strand, within HP15_1243 at 1296.494 kb on - strand, within HP15_1243 at 1296.554 kb on + strand, within HP15_1243 at 1296.562 kb on - strand, within HP15_1243 at 1296.562 kb on - strand, within HP15_1243 at 1296.562 kb on - strand, within HP15_1243 at 1296.576 kb on + strand, within HP15_1243 at 1296.592 kb on - strand, within HP15_1243 at 1296.594 kb on + strand, within HP15_1243 at 1296.594 kb on + strand, within HP15_1243 at 1296.594 kb on + strand, within HP15_1243 at 1296.594 kb on + strand, within HP15_1243 at 1296.594 kb on + strand, within HP15_1243 at 1296.594 kb on + strand, within HP15_1243 at 1296.594 kb on + strand, within HP15_1243 at 1296.594 kb on + strand, within HP15_1243 at 1296.602 kb on - strand, within HP15_1243 at 1296.602 kb on - strand, within HP15_1243 at 1296.602 kb on - strand, within HP15_1243 at 1296.620 kb on + strand, within HP15_1243 at 1296.687 kb on - strand, within HP15_1243 at 1296.689 kb on + strand, within HP15_1243 at 1296.751 kb on - strand, within HP15_1243 at 1296.769 kb on - strand, within HP15_1243 at 1296.843 kb on + strand, within HP15_1243 at 1296.877 kb on - strand at 1296.897 kb on + strand at 1296.938 kb on + strand, within HP15_1244 at 1297.147 kb on - strand at 1297.153 kb on - strand at 1297.317 kb on - strand, within HP15_1245 at 1297.332 kb on - strand, within HP15_1245 at 1297.509 kb on + strand, within HP15_1245 at 1297.566 kb on - strand, within HP15_1245 at 1297.608 kb on + strand, within HP15_1245 at 1297.615 kb on + strand, within HP15_1245 at 1297.678 kb on + strand, within HP15_1245 at 1297.685 kb on + strand, within HP15_1245 at 1297.734 kb on - strand, within HP15_1245 at 1297.744 kb on - strand, within HP15_1245 at 1297.751 kb on + strand, within HP15_1245
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 5 remove 1,295,409 - HP15_1241 0.50 -0.3 1,295,498 + HP15_1241 0.66 +2.1 1,295,626 + HP15_1241 0.89 +0.2 1,295,677 - -0.1 1,295,783 - -1.0 1,295,814 + -0.2 1,295,847 - HP15_1242 0.11 -1.0 1,295,855 + HP15_1242 0.12 -2.4 1,296,070 + HP15_1242 0.49 +1.7 1,296,078 - HP15_1242 0.50 -0.8 1,296,137 - HP15_1242 0.60 -1.9 1,296,355 + -1.0 1,296,363 - +1.3 1,296,445 + HP15_1243 0.13 -0.5 1,296,453 - HP15_1243 0.15 -0.8 1,296,494 - HP15_1243 0.23 -0.1 1,296,554 + HP15_1243 0.34 -0.9 1,296,562 - HP15_1243 0.35 +1.6 1,296,562 - HP15_1243 0.35 +1.5 1,296,562 - HP15_1243 0.35 -0.2 1,296,576 + HP15_1243 0.38 +1.2 1,296,592 - HP15_1243 0.41 -0.7 1,296,594 + HP15_1243 0.41 +0.0 1,296,594 + HP15_1243 0.41 +2.4 1,296,594 + HP15_1243 0.41 -1.1 1,296,594 + HP15_1243 0.41 -1.8 1,296,594 + HP15_1243 0.41 -0.6 1,296,594 + HP15_1243 0.41 +2.0 1,296,594 + HP15_1243 0.41 +0.3 1,296,594 + HP15_1243 0.41 -0.9 1,296,602 - HP15_1243 0.43 -2.3 1,296,602 - HP15_1243 0.43 -1.1 1,296,602 - HP15_1243 0.43 -0.6 1,296,620 + HP15_1243 0.46 -1.2 1,296,687 - HP15_1243 0.59 +1.7 1,296,689 + HP15_1243 0.59 +0.6 1,296,751 - HP15_1243 0.71 -0.4 1,296,769 - HP15_1243 0.74 +0.4 1,296,843 + HP15_1243 0.88 +0.3 1,296,877 - -0.5 1,296,897 + -0.1 1,296,938 + HP15_1244 0.19 +2.3 1,297,147 - +1.0 1,297,153 - -1.4 1,297,317 - HP15_1245 0.17 +2.7 1,297,332 - HP15_1245 0.19 -0.2 1,297,509 + HP15_1245 0.34 -0.7 1,297,566 - HP15_1245 0.38 +0.7 1,297,608 + HP15_1245 0.42 +1.6 1,297,615 + HP15_1245 0.42 -0.3 1,297,678 + HP15_1245 0.48 +0.2 1,297,685 + HP15_1245 0.48 -1.1 1,297,734 - HP15_1245 0.52 -0.6 1,297,744 - HP15_1245 0.53 -0.3 1,297,751 + HP15_1245 0.54 -0.6
Or see this region's nucleotide sequence