Strain Fitness in Marinobacter adhaerens HP15 around HP15_110

Experiment: monoculture; Experiment B, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment B, time point 5
112,964	-		HP15_109	0.25	-0.8
113,010	+		HP15_109	0.29	-0.5
113,028	-		HP15_109	0.30	-0.6
113,028	-		HP15_109	0.30	-0.6
113,028	-		HP15_109	0.30	+0.0
113,033	-		HP15_109	0.31	+0.2
113,131	+		HP15_109	0.39	-1.2
113,255	+		HP15_109	0.49	-1.6
113,287	-		HP15_109	0.52	-0.8
113,292	-		HP15_109	0.53	+0.5
113,297	-		HP15_109	0.53	-0.6
113,320	+		HP15_109	0.55	-1.0
113,327	+		HP15_109	0.56	+1.8
113,334	-		HP15_109	0.56	+2.1
113,336	+		HP15_109	0.56	-1.3
113,336	+		HP15_109	0.56	+0.0
113,349	-		HP15_109	0.57	-0.5
113,368	+		HP15_109	0.59	+0.1
113,434	+		HP15_109	0.65	+1.7
113,434	+		HP15_109	0.65	-1.3
113,434	+		HP15_109	0.65	+2.0
113,474	+		HP15_109	0.68	+0.1
113,492	+		HP15_109	0.69	-0.6
113,539	+		HP15_109	0.73	+0.8
113,627	-		HP15_109	0.81	+2.5
113,636	+		HP15_109	0.82	+2.1
113,705	-		HP15_109	0.87	+2.1
113,711	+		HP15_109	0.88	+0.0
113,749	-				-0.7
113,782	+				-0.5
113,803	-				+2.9
113,805	+				+2.0
113,848	+				-0.3
113,848	+				-0.2
113,848	+				-0.2
113,848	+				+1.2
113,856	-				-3.7
113,856	-				-1.7
113,856	-				+0.2
113,856	-				-0.8
113,904	+				-0.0
114,006	+				-0.8
114,009	-				-0.6
114,025	+				+2.4
114,070	+				-2.1
114,179	-		HP15_110	0.10	-0.5
114,212	-		HP15_110	0.11	+0.0
114,248	+		HP15_110	0.12	-0.3
114,274	+		HP15_110	0.13	+1.0
114,292	-		HP15_110	0.14	+1.9
114,348	+		HP15_110	0.15	+2.0
114,348	+		HP15_110	0.15	+2.0
114,348	+		HP15_110	0.15	-2.2
114,374	+		HP15_110	0.16	+0.6
114,374	+		HP15_110	0.16	-1.7
114,374	+		HP15_110	0.16	-1.3
114,374	+		HP15_110	0.16	+1.1
114,374	+		HP15_110	0.16	+1.9
114,374	+		HP15_110	0.16	-0.4
114,374	+		HP15_110	0.16	+1.2
114,374	+		HP15_110	0.16	-1.3
114,374	+		HP15_110	0.16	+1.7
114,382	-		HP15_110	0.17	-0.0
114,382	-		HP15_110	0.17	+0.0
114,382	-		HP15_110	0.17	+1.9
114,382	-		HP15_110	0.17	+1.8
114,382	-		HP15_110	0.17	-0.9
114,405	-		HP15_110	0.17	+0.2
114,421	+		HP15_110	0.18	+2.0
114,437	+		HP15_110	0.18	-1.1
114,445	-		HP15_110	0.19	+1.7
114,478	-		HP15_110	0.20	+2.8
114,554	+		HP15_110	0.22	+0.4
114,575	+		HP15_110	0.23	+0.9
114,591	+		HP15_110	0.23	+1.6
114,629	+		HP15_110	0.24	+1.0
114,629	+		HP15_110	0.24	-0.4
114,629	+		HP15_110	0.24	-1.4
114,637	-		HP15_110	0.25	-0.1
114,637	-		HP15_110	0.25	+1.1
114,637	-		HP15_110	0.25	-0.2
114,637	-		HP15_110	0.25	-1.5
114,637	-		HP15_110	0.25	-0.2
114,677	+		HP15_110	0.26	-0.2
114,682	+		HP15_110	0.26	+0.9
114,706	+		HP15_110	0.27	+1.8
114,706	+		HP15_110	0.27	-0.9
114,711	+		HP15_110	0.27	-0.5
114,714	-		HP15_110	0.27	+0.2
114,714	-		HP15_110	0.27	-0.5
114,716	+		HP15_110	0.27	-0.7
114,724	-		HP15_110	0.28	+0.2
114,724	-		HP15_110	0.28	-1.0
114,805	+		HP15_110	0.30	+2.5
114,851	+		HP15_110	0.32	+3.3
114,882	+		HP15_110	0.33	+2.0
114,882	+		HP15_110	0.33	-2.5
114,889	+		HP15_110	0.33	+0.2
114,902	-		HP15_110	0.33	-1.2
114,908	+		HP15_110	0.33	+2.0
114,916	-		HP15_110	0.34	-0.8
115,030	+		HP15_110	0.37	-1.0
115,038	-		HP15_110	0.38	-0.6
115,038	-		HP15_110	0.38	-0.4
115,057	+		HP15_110	0.38	-1.8
115,064	+		HP15_110	0.38	+2.1
115,065	-		HP15_110	0.39	+1.9
115,065	-		HP15_110	0.39	+0.1
115,107	-		HP15_110	0.40	-0.4
115,112	-		HP15_110	0.40	+0.1
115,112	-		HP15_110	0.40	+0.4
115,260	+		HP15_110	0.45	+1.6
115,260	+		HP15_110	0.45	+0.6
115,260	+		HP15_110	0.45	+1.4
115,260	-		HP15_110	0.45	-0.3
115,435	+		HP15_110	0.50	+1.2
115,442	+		HP15_110	0.51	-0.0
115,470	+		HP15_110	0.52	+2.1
115,509	+		HP15_110	0.53	+2.4
115,550	+		HP15_110	0.54	+1.9
115,716	+		HP15_110	0.59	-0.2
115,811	+		HP15_110	0.63	+0.4
115,811	+		HP15_110	0.63	-0.4
115,938	-		HP15_110	0.67	-0.9
115,962	+		HP15_110	0.67	-0.7
116,010	+		HP15_110	0.69	-0.1
116,012	+		HP15_110	0.69	+1.4
116,058	-		HP15_110	0.70	-0.8
116,069	+		HP15_110	0.71	+2.4
116,096	-		HP15_110	0.72	+1.1
116,297	-		HP15_110	0.78	+2.6
116,353	+		HP15_110	0.80	+1.6
116,368	+		HP15_110	0.80	-0.5
116,467	-		HP15_110	0.84	-0.2
116,495	-		HP15_110	0.85	+2.2
116,556	+		HP15_110	0.86	+1.0
116,556	+		HP15_110	0.86	-0.5
116,684	-				+0.0
116,699	+				+1.7
116,753	+				+1.9
116,760	+				+1.7
116,781	+				+1.8
116,781	+				-1.3
116,789	-				+2.1
116,813	-				-0.1
116,847	-				+2.1
116,896	+				+0.3
116,896	+				-1.2
116,897	-				+1.6
116,904	-				-0.3
116,911	+				+0.2
116,927	-				+1.2
116,929	+				-1.0
116,932	-				+0.2
116,937	-				-0.6
116,937	-				+0.6
116,964	+				-1.5
117,014	-				+1.3
117,067	-		HP15_111	0.21	-1.5
117,161	-		HP15_111	0.49	-0.4
117,271	+		HP15_111	0.81	+0.1
117,279	-		HP15_111	0.83	+2.1
117,317	+				+2.1
117,317	+				-2.6
117,325	-				+0.7
117,327	+				+0.1
117,436	-				-1.2
117,530	-				-0.1
117,541	-				+0.3
117,577	-				+0.1
117,642	+				-0.3
117,702	+				-1.8
117,744	-				-2.2
117,747	+				-0.6
117,963	+				-2.2
117,971	-				-1.9