Strain Fitness in Marinobacter adhaerens HP15 around HP15_103

Experiment: monoculture; Experiment B, time point 5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_102 and HP15_103 are separated by 73 nucleotidesHP15_103 and HP15_104 are separated by 30 nucleotides HP15_102: HP15_102 - conserved hypothetical protein, secreted, at 104,559 to 105,965 _102 HP15_103: HP15_103 - conserved hypothetical protein, secreted, at 106,039 to 107,577 _103 HP15_104: HP15_104 - integral membrane sensor signal transduction histidine kinase, at 107,608 to 108,921 _104 Position (kb) 106 107 108Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 105.053 kb on + strand, within HP15_102at 105.076 kb on + strand, within HP15_102at 105.097 kb on + strand, within HP15_102at 105.097 kb on + strand, within HP15_102at 105.102 kb on + strand, within HP15_102at 105.105 kb on - strand, within HP15_102at 105.105 kb on - strand, within HP15_102at 105.149 kb on + strand, within HP15_102at 105.154 kb on + strand, within HP15_102at 105.157 kb on - strand, within HP15_102at 105.163 kb on + strand, within HP15_102at 105.193 kb on - strand, within HP15_102at 105.242 kb on - strand, within HP15_102at 105.376 kb on + strand, within HP15_102at 105.393 kb on + strand, within HP15_102at 105.440 kb on + strand, within HP15_102at 105.448 kb on - strand, within HP15_102at 105.474 kb on - strand, within HP15_102at 105.497 kb on + strand, within HP15_102at 105.497 kb on + strand, within HP15_102at 105.505 kb on - strand, within HP15_102at 105.540 kb on + strand, within HP15_102at 105.578 kb on - strand, within HP15_102at 105.639 kb on + strand, within HP15_102at 105.647 kb on - strand, within HP15_102at 105.711 kb on - strand, within HP15_102at 105.741 kb on + strand, within HP15_102at 105.741 kb on + strand, within HP15_102at 105.749 kb on - strand, within HP15_102at 105.815 kb on - strand, within HP15_102at 105.817 kb on + strand, within HP15_102at 105.817 kb on + strand, within HP15_102at 105.817 kb on + strand, within HP15_102at 105.826 kb on - strandat 105.826 kb on - strandat 105.953 kb on + strandat 105.969 kb on + strandat 106.125 kb on + strandat 106.125 kb on + strandat 106.132 kb on - strandat 106.133 kb on - strandat 106.133 kb on - strandat 106.133 kb on - strandat 106.133 kb on - strandat 106.172 kb on - strandat 106.195 kb on - strand, within HP15_103at 106.296 kb on - strand, within HP15_103at 106.392 kb on + strand, within HP15_103at 106.400 kb on - strand, within HP15_103at 106.459 kb on - strand, within HP15_103at 106.459 kb on - strand, within HP15_103at 106.484 kb on + strand, within HP15_103at 106.504 kb on + strand, within HP15_103at 106.504 kb on + strand, within HP15_103at 106.512 kb on - strand, within HP15_103at 106.512 kb on - strand, within HP15_103at 106.512 kb on - strand, within HP15_103at 106.524 kb on + strand, within HP15_103at 106.544 kb on + strand, within HP15_103at 106.549 kb on + strand, within HP15_103at 106.549 kb on + strand, within HP15_103at 106.549 kb on + strand, within HP15_103at 106.554 kb on + strand, within HP15_103at 106.554 kb on + strand, within HP15_103at 106.557 kb on - strand, within HP15_103at 106.557 kb on - strand, within HP15_103at 106.562 kb on - strand, within HP15_103at 106.562 kb on - strand, within HP15_103at 106.562 kb on - strand, within HP15_103at 106.562 kb on - strand, within HP15_103at 106.572 kb on - strand, within HP15_103at 106.585 kb on + strand, within HP15_103at 106.605 kb on - strand, within HP15_103at 106.631 kb on + strand, within HP15_103at 106.729 kb on + strand, within HP15_103at 106.732 kb on + strand, within HP15_103at 106.732 kb on + strand, within HP15_103at 106.732 kb on + strand, within HP15_103at 106.732 kb on + strand, within HP15_103at 106.740 kb on - strand, within HP15_103at 106.740 kb on - strand, within HP15_103at 106.740 kb on - strand, within HP15_103at 106.740 kb on - strand, within HP15_103at 106.756 kb on - strand, within HP15_103at 106.895 kb on + strand, within HP15_103at 106.903 kb on + strand, within HP15_103at 106.978 kb on + strand, within HP15_103at 106.978 kb on + strand, within HP15_103at 106.978 kb on + strand, within HP15_103at 106.978 kb on + strand, within HP15_103at 106.981 kb on - strand, within HP15_103at 106.986 kb on - strand, within HP15_103at 106.986 kb on - strand, within HP15_103at 107.027 kb on + strand, within HP15_103at 107.027 kb on + strand, within HP15_103at 107.027 kb on + strand, within HP15_103at 107.027 kb on + strand, within HP15_103at 107.035 kb on - strand, within HP15_103at 107.035 kb on - strand, within HP15_103at 107.035 kb on - strand, within HP15_103at 107.035 kb on - strand, within HP15_103at 107.037 kb on + strand, within HP15_103at 107.037 kb on + strand, within HP15_103at 107.037 kb on + strand, within HP15_103at 107.037 kb on + strand, within HP15_103at 107.045 kb on - strand, within HP15_103at 107.045 kb on - strand, within HP15_103at 107.101 kb on + strand, within HP15_103at 107.101 kb on + strand, within HP15_103at 107.101 kb on + strand, within HP15_103at 107.106 kb on + strand, within HP15_103at 107.109 kb on - strand, within HP15_103at 107.109 kb on - strand, within HP15_103at 107.112 kb on + strand, within HP15_103at 107.114 kb on - strand, within HP15_103at 107.119 kb on + strand, within HP15_103at 107.119 kb on + strand, within HP15_103at 107.127 kb on - strand, within HP15_103at 107.127 kb on - strand, within HP15_103at 107.127 kb on - strand, within HP15_103at 107.185 kb on + strand, within HP15_103at 107.193 kb on - strand, within HP15_103at 107.256 kb on - strand, within HP15_103at 107.264 kb on - strand, within HP15_103at 107.318 kb on - strand, within HP15_103at 107.469 kb on + strandat 107.474 kb on + strandat 107.477 kb on - strandat 107.648 kb on + strandat 107.655 kb on - strandat 107.656 kb on - strandat 107.675 kb on + strandat 107.715 kb on + strandat 107.715 kb on + strandat 107.723 kb on - strandat 107.787 kb on + strand, within HP15_104at 107.793 kb on + strand, within HP15_104at 107.828 kb on + strand, within HP15_104at 107.894 kb on + strand, within HP15_104at 107.950 kb on + strand, within HP15_104at 107.951 kb on - strand, within HP15_104at 107.992 kb on - strand, within HP15_104at 108.002 kb on + strand, within HP15_104at 108.035 kb on + strand, within HP15_104at 108.143 kb on - strand, within HP15_104at 108.164 kb on + strand, within HP15_104at 108.191 kb on + strand, within HP15_104at 108.222 kb on + strand, within HP15_104at 108.316 kb on - strand, within HP15_104at 108.320 kb on + strand, within HP15_104at 108.447 kb on + strand, within HP15_104

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 5
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105,053 + HP15_102 0.35 +0.2
105,076 + HP15_102 0.37 -0.4
105,097 + HP15_102 0.38 -1.4
105,097 + HP15_102 0.38 +0.0
105,102 + HP15_102 0.39 +0.5
105,105 - HP15_102 0.39 -1.3
105,105 - HP15_102 0.39 +1.2
105,149 + HP15_102 0.42 +2.0
105,154 + HP15_102 0.42 +1.9
105,157 - HP15_102 0.43 +0.8
105,163 + HP15_102 0.43 +0.7
105,193 - HP15_102 0.45 -0.4
105,242 - HP15_102 0.49 -0.1
105,376 + HP15_102 0.58 -0.7
105,393 + HP15_102 0.59 +2.0
105,440 + HP15_102 0.63 +0.6
105,448 - HP15_102 0.63 +2.7
105,474 - HP15_102 0.65 +2.2
105,497 + HP15_102 0.67 +0.6
105,497 + HP15_102 0.67 -1.4
105,505 - HP15_102 0.67 -2.0
105,540 + HP15_102 0.70 +2.2
105,578 - HP15_102 0.72 +2.0
105,639 + HP15_102 0.77 +2.1
105,647 - HP15_102 0.77 -0.8
105,711 - HP15_102 0.82 +1.5
105,741 + HP15_102 0.84 +1.8
105,741 + HP15_102 0.84 -2.0
105,749 - HP15_102 0.85 +1.0
105,815 - HP15_102 0.89 -0.6
105,817 + HP15_102 0.89 +2.3
105,817 + HP15_102 0.89 +1.2
105,817 + HP15_102 0.89 +0.8
105,826 - -2.0
105,826 - +0.7
105,953 + +1.5
105,969 + +1.2
106,125 + -0.3
106,125 + -1.1
106,132 - -0.0
106,133 - -1.3
106,133 - -0.7
106,133 - +1.0
106,133 - +0.8
106,172 - +2.3
106,195 - HP15_103 0.10 +1.9
106,296 - HP15_103 0.17 -1.1
106,392 + HP15_103 0.23 +1.1
106,400 - HP15_103 0.23 -2.4
106,459 - HP15_103 0.27 +1.9
106,459 - HP15_103 0.27 -2.5
106,484 + HP15_103 0.29 -0.7
106,504 + HP15_103 0.30 -0.7
106,504 + HP15_103 0.30 +2.2
106,512 - HP15_103 0.31 -0.4
106,512 - HP15_103 0.31 -0.1
106,512 - HP15_103 0.31 +0.5
106,524 + HP15_103 0.32 -0.2
106,544 + HP15_103 0.33 +1.0
106,549 + HP15_103 0.33 +2.2
106,549 + HP15_103 0.33 -0.6
106,549 + HP15_103 0.33 +2.4
106,554 + HP15_103 0.33 -1.2
106,554 + HP15_103 0.33 -0.9
106,557 - HP15_103 0.34 +2.5
106,557 - HP15_103 0.34 -0.1
106,562 - HP15_103 0.34 -0.4
106,562 - HP15_103 0.34 -1.3
106,562 - HP15_103 0.34 -0.2
106,562 - HP15_103 0.34 -0.3
106,572 - HP15_103 0.35 -0.2
106,585 + HP15_103 0.35 +0.1
106,605 - HP15_103 0.37 -0.6
106,631 + HP15_103 0.38 +2.2
106,729 + HP15_103 0.45 -0.2
106,732 + HP15_103 0.45 -0.1
106,732 + HP15_103 0.45 +3.0
106,732 + HP15_103 0.45 -0.6
106,732 + HP15_103 0.45 -0.1
106,740 - HP15_103 0.46 -0.8
106,740 - HP15_103 0.46 -1.1
106,740 - HP15_103 0.46 -0.3
106,740 - HP15_103 0.46 -0.3
106,756 - HP15_103 0.47 -0.2
106,895 + HP15_103 0.56 +0.5
106,903 + HP15_103 0.56 -1.5
106,978 + HP15_103 0.61 -0.1
106,978 + HP15_103 0.61 +1.8
106,978 + HP15_103 0.61 +0.2
106,978 + HP15_103 0.61 -0.3
106,981 - HP15_103 0.61 -0.6
106,986 - HP15_103 0.62 -0.5
106,986 - HP15_103 0.62 +1.9
107,027 + HP15_103 0.64 -3.0
107,027 + HP15_103 0.64 -0.8
107,027 + HP15_103 0.64 -1.0
107,027 + HP15_103 0.64 +1.3
107,035 - HP15_103 0.65 -0.8
107,035 - HP15_103 0.65 -1.5
107,035 - HP15_103 0.65 +1.9
107,035 - HP15_103 0.65 -1.8
107,037 + HP15_103 0.65 -0.5
107,037 + HP15_103 0.65 -0.1
107,037 + HP15_103 0.65 +1.5
107,037 + HP15_103 0.65 -1.3
107,045 - HP15_103 0.65 -0.7
107,045 - HP15_103 0.65 -0.3
107,101 + HP15_103 0.69 +2.3
107,101 + HP15_103 0.69 -0.9
107,101 + HP15_103 0.69 -0.3
107,106 + HP15_103 0.69 +0.1
107,109 - HP15_103 0.70 -0.3
107,109 - HP15_103 0.70 +2.3
107,112 + HP15_103 0.70 +0.8
107,114 - HP15_103 0.70 +0.3
107,119 + HP15_103 0.70 -0.3
107,119 + HP15_103 0.70 +0.1
107,127 - HP15_103 0.71 +2.1
107,127 - HP15_103 0.71 -0.1
107,127 - HP15_103 0.71 +1.1
107,185 + HP15_103 0.74 +3.1
107,193 - HP15_103 0.75 -0.8
107,256 - HP15_103 0.79 -0.0
107,264 - HP15_103 0.80 +2.7
107,318 - HP15_103 0.83 +0.3
107,469 + -0.9
107,474 + +0.3
107,477 - +2.2
107,648 + +2.7
107,655 - +0.5
107,656 - +2.5
107,675 + +2.2
107,715 + +1.5
107,715 + -0.6
107,723 - +2.9
107,787 + HP15_104 0.14 +1.7
107,793 + HP15_104 0.14 -1.7
107,828 + HP15_104 0.17 +2.0
107,894 + HP15_104 0.22 +2.1
107,950 + HP15_104 0.26 +2.1
107,951 - HP15_104 0.26 -0.1
107,992 - HP15_104 0.29 -0.2
108,002 + HP15_104 0.30 -0.3
108,035 + HP15_104 0.32 -0.1
108,143 - HP15_104 0.41 -0.1
108,164 + HP15_104 0.42 +2.2
108,191 + HP15_104 0.44 +2.2
108,222 + HP15_104 0.47 +1.5
108,316 - HP15_104 0.54 -0.0
108,320 + HP15_104 0.54 +0.7
108,447 + HP15_104 0.64 +2.0

Or see this region's nucleotide sequence