Strain Fitness in Marinobacter adhaerens HP15 around HP15_1001

Experiment: monoculture; Experiment B, time point 5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_999 and HP15_1000 are separated by 94 nucleotidesHP15_1000 and HP15_1001 are separated by 14 nucleotidesHP15_1001 and HP15_1002 overlap by 1 nucleotides HP15_999: HP15_999 - acyl-CoA synthase, at 1,008,186 to 1,009,832 _999 HP15_1000: HP15_1000 - uncharacterized peroxidase-related protein, at 1,009,927 to 1,010,502 _1000 HP15_1001: HP15_1001 - pyruvate carboxyltransferase, at 1,010,517 to 1,011,422 _1001 HP15_1002: HP15_1002 - methylcrotonyl-CoA carboxylase, alpha subunit, at 1,011,422 to 1,013,416 _1002 Position (kb) 1010 1011 1012Strain fitness (log2 ratio) -2 -1 0 1at 1009.563 kb on - strand, within HP15_999at 1009.686 kb on + strandat 1009.755 kb on + strandat 1009.755 kb on + strandat 1009.848 kb on + strandat 1009.872 kb on - strandat 1009.926 kb on - strandat 1009.985 kb on + strand, within HP15_1000at 1010.119 kb on + strand, within HP15_1000at 1010.179 kb on - strand, within HP15_1000at 1010.361 kb on + strand, within HP15_1000

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 5
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1,009,563 - HP15_999 0.84 -1.2
1,009,686 + -1.7
1,009,755 + -2.4
1,009,755 + -0.0
1,009,848 + -0.6
1,009,872 - -1.0
1,009,926 - +1.6
1,009,985 + HP15_1000 0.10 -1.0
1,010,119 + HP15_1000 0.33 -0.4
1,010,179 - HP15_1000 0.44 -1.1
1,010,361 + HP15_1000 0.75 -0.6

Or see this region's nucleotide sequence