Strain Fitness in Marinobacter adhaerens HP15 around HP15_102

Experiment: monoculture; Experiment B, time point 5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_101 and HP15_102 are separated by 248 nucleotidesHP15_102 and HP15_103 are separated by 73 nucleotides HP15_101: HP15_101 - outer membrane porin, at 103,339 to 104,310 _101 HP15_102: HP15_102 - conserved hypothetical protein, secreted, at 104,559 to 105,965 _102 HP15_103: HP15_103 - conserved hypothetical protein, secreted, at 106,039 to 107,577 _103 Position (kb) 104 105 106Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 103.582 kb on + strand, within HP15_101at 103.589 kb on + strand, within HP15_101at 103.589 kb on + strand, within HP15_101at 103.597 kb on - strand, within HP15_101at 103.599 kb on + strand, within HP15_101at 103.607 kb on - strand, within HP15_101at 103.624 kb on - strand, within HP15_101at 103.632 kb on + strand, within HP15_101at 103.666 kb on + strand, within HP15_101at 103.666 kb on + strand, within HP15_101at 103.666 kb on + strand, within HP15_101at 103.666 kb on + strand, within HP15_101at 103.666 kb on + strand, within HP15_101at 103.674 kb on - strand, within HP15_101at 103.674 kb on - strand, within HP15_101at 103.674 kb on - strand, within HP15_101at 103.674 kb on - strand, within HP15_101at 103.683 kb on + strand, within HP15_101at 103.683 kb on + strand, within HP15_101at 103.683 kb on + strand, within HP15_101at 103.683 kb on + strand, within HP15_101at 103.683 kb on + strand, within HP15_101at 103.683 kb on + strand, within HP15_101at 103.683 kb on + strand, within HP15_101at 103.683 kb on + strand, within HP15_101at 103.683 kb on + strand, within HP15_101at 103.683 kb on + strand, within HP15_101at 103.683 kb on + strand, within HP15_101at 103.683 kb on + strand, within HP15_101at 103.691 kb on - strand, within HP15_101at 103.691 kb on - strand, within HP15_101at 103.691 kb on - strand, within HP15_101at 103.691 kb on - strand, within HP15_101at 103.691 kb on - strand, within HP15_101at 103.696 kb on - strand, within HP15_101at 103.698 kb on + strand, within HP15_101at 103.762 kb on + strand, within HP15_101at 103.762 kb on + strand, within HP15_101at 103.767 kb on + strand, within HP15_101at 103.767 kb on + strand, within HP15_101at 103.770 kb on - strand, within HP15_101at 103.780 kb on + strand, within HP15_101at 103.823 kb on - strand, within HP15_101at 103.999 kb on - strand, within HP15_101at 103.999 kb on - strand, within HP15_101at 104.032 kb on + strand, within HP15_101at 104.047 kb on + strand, within HP15_101at 104.118 kb on + strand, within HP15_101at 104.123 kb on + strand, within HP15_101at 104.164 kb on + strand, within HP15_101at 104.179 kb on + strand, within HP15_101at 104.187 kb on - strand, within HP15_101at 104.217 kb on + strandat 104.217 kb on + strandat 104.225 kb on - strandat 104.251 kb on - strandat 104.266 kb on - strandat 104.266 kb on - strandat 104.266 kb on - strandat 104.285 kb on + strandat 104.376 kb on + strandat 104.384 kb on - strandat 104.571 kb on + strandat 104.594 kb on + strandat 104.604 kb on - strandat 104.614 kb on - strandat 104.657 kb on - strandat 104.660 kb on - strandat 104.672 kb on + strandat 104.672 kb on + strandat 104.672 kb on + strandat 104.672 kb on + strandat 104.680 kb on - strandat 104.680 kb on - strandat 104.680 kb on - strandat 104.680 kb on - strandat 104.815 kb on - strand, within HP15_102at 104.839 kb on - strand, within HP15_102at 104.839 kb on - strand, within HP15_102at 104.855 kb on + strand, within HP15_102at 104.863 kb on - strand, within HP15_102at 104.875 kb on - strand, within HP15_102at 104.883 kb on + strand, within HP15_102at 104.891 kb on + strand, within HP15_102at 104.891 kb on + strand, within HP15_102at 104.901 kb on + strand, within HP15_102at 104.935 kb on + strand, within HP15_102at 104.935 kb on + strand, within HP15_102at 104.935 kb on + strand, within HP15_102at 104.935 kb on + strand, within HP15_102at 104.935 kb on + strand, within HP15_102at 104.943 kb on - strand, within HP15_102at 104.943 kb on - strand, within HP15_102at 105.015 kb on + strand, within HP15_102at 105.033 kb on - strand, within HP15_102at 105.053 kb on + strand, within HP15_102at 105.076 kb on + strand, within HP15_102at 105.097 kb on + strand, within HP15_102at 105.097 kb on + strand, within HP15_102at 105.102 kb on + strand, within HP15_102at 105.105 kb on - strand, within HP15_102at 105.105 kb on - strand, within HP15_102at 105.149 kb on + strand, within HP15_102at 105.154 kb on + strand, within HP15_102at 105.157 kb on - strand, within HP15_102at 105.163 kb on + strand, within HP15_102at 105.193 kb on - strand, within HP15_102at 105.242 kb on - strand, within HP15_102at 105.376 kb on + strand, within HP15_102at 105.393 kb on + strand, within HP15_102at 105.440 kb on + strand, within HP15_102at 105.448 kb on - strand, within HP15_102at 105.474 kb on - strand, within HP15_102at 105.497 kb on + strand, within HP15_102at 105.497 kb on + strand, within HP15_102at 105.505 kb on - strand, within HP15_102at 105.540 kb on + strand, within HP15_102at 105.578 kb on - strand, within HP15_102at 105.639 kb on + strand, within HP15_102at 105.647 kb on - strand, within HP15_102at 105.711 kb on - strand, within HP15_102at 105.741 kb on + strand, within HP15_102at 105.741 kb on + strand, within HP15_102at 105.749 kb on - strand, within HP15_102at 105.815 kb on - strand, within HP15_102at 105.817 kb on + strand, within HP15_102at 105.817 kb on + strand, within HP15_102at 105.817 kb on + strand, within HP15_102at 105.826 kb on - strandat 105.826 kb on - strandat 105.953 kb on + strandat 105.969 kb on + strandat 106.125 kb on + strandat 106.125 kb on + strandat 106.132 kb on - strandat 106.133 kb on - strandat 106.133 kb on - strandat 106.133 kb on - strandat 106.133 kb on - strandat 106.172 kb on - strandat 106.195 kb on - strand, within HP15_103at 106.296 kb on - strand, within HP15_103at 106.392 kb on + strand, within HP15_103at 106.400 kb on - strand, within HP15_103at 106.459 kb on - strand, within HP15_103at 106.459 kb on - strand, within HP15_103at 106.484 kb on + strand, within HP15_103at 106.504 kb on + strand, within HP15_103at 106.504 kb on + strand, within HP15_103at 106.512 kb on - strand, within HP15_103at 106.512 kb on - strand, within HP15_103at 106.512 kb on - strand, within HP15_103at 106.524 kb on + strand, within HP15_103at 106.544 kb on + strand, within HP15_103at 106.549 kb on + strand, within HP15_103at 106.549 kb on + strand, within HP15_103at 106.549 kb on + strand, within HP15_103at 106.554 kb on + strand, within HP15_103at 106.554 kb on + strand, within HP15_103at 106.557 kb on - strand, within HP15_103at 106.557 kb on - strand, within HP15_103at 106.562 kb on - strand, within HP15_103at 106.562 kb on - strand, within HP15_103at 106.562 kb on - strand, within HP15_103at 106.562 kb on - strand, within HP15_103at 106.572 kb on - strand, within HP15_103at 106.585 kb on + strand, within HP15_103at 106.605 kb on - strand, within HP15_103at 106.631 kb on + strand, within HP15_103at 106.729 kb on + strand, within HP15_103at 106.732 kb on + strand, within HP15_103at 106.732 kb on + strand, within HP15_103at 106.732 kb on + strand, within HP15_103at 106.732 kb on + strand, within HP15_103at 106.740 kb on - strand, within HP15_103at 106.740 kb on - strand, within HP15_103at 106.740 kb on - strand, within HP15_103at 106.740 kb on - strand, within HP15_103at 106.756 kb on - strand, within HP15_103at 106.895 kb on + strand, within HP15_103at 106.903 kb on + strand, within HP15_103

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 5
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103,582 + HP15_101 0.25 +0.8
103,589 + HP15_101 0.26 +2.0
103,589 + HP15_101 0.26 -1.4
103,597 - HP15_101 0.27 +2.1
103,599 + HP15_101 0.27 +1.3
103,607 - HP15_101 0.28 -0.6
103,624 - HP15_101 0.29 -0.0
103,632 + HP15_101 0.30 -0.6
103,666 + HP15_101 0.34 -0.8
103,666 + HP15_101 0.34 -1.8
103,666 + HP15_101 0.34 -0.5
103,666 + HP15_101 0.34 -0.5
103,666 + HP15_101 0.34 +0.2
103,674 - HP15_101 0.34 +0.5
103,674 - HP15_101 0.34 -1.4
103,674 - HP15_101 0.34 -1.1
103,674 - HP15_101 0.34 -0.6
103,683 + HP15_101 0.35 +1.5
103,683 + HP15_101 0.35 -0.9
103,683 + HP15_101 0.35 -0.4
103,683 + HP15_101 0.35 -0.6
103,683 + HP15_101 0.35 +0.7
103,683 + HP15_101 0.35 +0.9
103,683 + HP15_101 0.35 +2.4
103,683 + HP15_101 0.35 -0.3
103,683 + HP15_101 0.35 +1.9
103,683 + HP15_101 0.35 +1.3
103,683 + HP15_101 0.35 +1.6
103,683 + HP15_101 0.35 -0.7
103,691 - HP15_101 0.36 +2.2
103,691 - HP15_101 0.36 +2.1
103,691 - HP15_101 0.36 -1.3
103,691 - HP15_101 0.36 -0.5
103,691 - HP15_101 0.36 +0.1
103,696 - HP15_101 0.37 -2.5
103,698 + HP15_101 0.37 -0.4
103,762 + HP15_101 0.44 +0.5
103,762 + HP15_101 0.44 -0.3
103,767 + HP15_101 0.44 +0.7
103,767 + HP15_101 0.44 +1.1
103,770 - HP15_101 0.44 +0.3
103,780 + HP15_101 0.45 -3.0
103,823 - HP15_101 0.50 +1.3
103,999 - HP15_101 0.68 -1.0
103,999 - HP15_101 0.68 -0.2
104,032 + HP15_101 0.71 -2.8
104,047 + HP15_101 0.73 -1.4
104,118 + HP15_101 0.80 +1.7
104,123 + HP15_101 0.81 -2.1
104,164 + HP15_101 0.85 -0.7
104,179 + HP15_101 0.86 +2.5
104,187 - HP15_101 0.87 +2.0
104,217 + -1.7
104,217 + -0.6
104,225 - +1.5
104,251 - +1.3
104,266 - -0.1
104,266 - -0.8
104,266 - -1.0
104,285 + +1.4
104,376 + +2.1
104,384 - +2.4
104,571 + +2.4
104,594 + +0.2
104,604 - +2.3
104,614 - +0.3
104,657 - +0.7
104,660 - +1.4
104,672 + -0.3
104,672 + +0.0
104,672 + -0.1
104,672 + +1.9
104,680 - +1.0
104,680 - -0.3
104,680 - -1.0
104,680 - +0.3
104,815 - HP15_102 0.18 +1.7
104,839 - HP15_102 0.20 +0.8
104,839 - HP15_102 0.20 +1.1
104,855 + HP15_102 0.21 +1.0
104,863 - HP15_102 0.22 -0.6
104,875 - HP15_102 0.22 -0.9
104,883 + HP15_102 0.23 +2.4
104,891 + HP15_102 0.24 +1.6
104,891 + HP15_102 0.24 +1.5
104,901 + HP15_102 0.24 -0.5
104,935 + HP15_102 0.27 -1.3
104,935 + HP15_102 0.27 +1.9
104,935 + HP15_102 0.27 -1.3
104,935 + HP15_102 0.27 +1.8
104,935 + HP15_102 0.27 -0.9
104,943 - HP15_102 0.27 -1.0
104,943 - HP15_102 0.27 +0.2
105,015 + HP15_102 0.32 +1.1
105,033 - HP15_102 0.34 -0.1
105,053 + HP15_102 0.35 +0.2
105,076 + HP15_102 0.37 -0.4
105,097 + HP15_102 0.38 -1.4
105,097 + HP15_102 0.38 +0.0
105,102 + HP15_102 0.39 +0.5
105,105 - HP15_102 0.39 -1.3
105,105 - HP15_102 0.39 +1.2
105,149 + HP15_102 0.42 +2.0
105,154 + HP15_102 0.42 +1.9
105,157 - HP15_102 0.43 +0.8
105,163 + HP15_102 0.43 +0.7
105,193 - HP15_102 0.45 -0.4
105,242 - HP15_102 0.49 -0.1
105,376 + HP15_102 0.58 -0.7
105,393 + HP15_102 0.59 +2.0
105,440 + HP15_102 0.63 +0.6
105,448 - HP15_102 0.63 +2.7
105,474 - HP15_102 0.65 +2.2
105,497 + HP15_102 0.67 +0.6
105,497 + HP15_102 0.67 -1.4
105,505 - HP15_102 0.67 -2.0
105,540 + HP15_102 0.70 +2.2
105,578 - HP15_102 0.72 +2.0
105,639 + HP15_102 0.77 +2.1
105,647 - HP15_102 0.77 -0.8
105,711 - HP15_102 0.82 +1.5
105,741 + HP15_102 0.84 +1.8
105,741 + HP15_102 0.84 -2.0
105,749 - HP15_102 0.85 +1.0
105,815 - HP15_102 0.89 -0.6
105,817 + HP15_102 0.89 +2.3
105,817 + HP15_102 0.89 +1.2
105,817 + HP15_102 0.89 +0.8
105,826 - -2.0
105,826 - +0.7
105,953 + +1.5
105,969 + +1.2
106,125 + -0.3
106,125 + -1.1
106,132 - -0.0
106,133 - -1.3
106,133 - -0.7
106,133 - +1.0
106,133 - +0.8
106,172 - +2.3
106,195 - HP15_103 0.10 +1.9
106,296 - HP15_103 0.17 -1.1
106,392 + HP15_103 0.23 +1.1
106,400 - HP15_103 0.23 -2.4
106,459 - HP15_103 0.27 +1.9
106,459 - HP15_103 0.27 -2.5
106,484 + HP15_103 0.29 -0.7
106,504 + HP15_103 0.30 -0.7
106,504 + HP15_103 0.30 +2.2
106,512 - HP15_103 0.31 -0.4
106,512 - HP15_103 0.31 -0.1
106,512 - HP15_103 0.31 +0.5
106,524 + HP15_103 0.32 -0.2
106,544 + HP15_103 0.33 +1.0
106,549 + HP15_103 0.33 +2.2
106,549 + HP15_103 0.33 -0.6
106,549 + HP15_103 0.33 +2.4
106,554 + HP15_103 0.33 -1.2
106,554 + HP15_103 0.33 -0.9
106,557 - HP15_103 0.34 +2.5
106,557 - HP15_103 0.34 -0.1
106,562 - HP15_103 0.34 -0.4
106,562 - HP15_103 0.34 -1.3
106,562 - HP15_103 0.34 -0.2
106,562 - HP15_103 0.34 -0.3
106,572 - HP15_103 0.35 -0.2
106,585 + HP15_103 0.35 +0.1
106,605 - HP15_103 0.37 -0.6
106,631 + HP15_103 0.38 +2.2
106,729 + HP15_103 0.45 -0.2
106,732 + HP15_103 0.45 -0.1
106,732 + HP15_103 0.45 +3.0
106,732 + HP15_103 0.45 -0.6
106,732 + HP15_103 0.45 -0.1
106,740 - HP15_103 0.46 -0.8
106,740 - HP15_103 0.46 -1.1
106,740 - HP15_103 0.46 -0.3
106,740 - HP15_103 0.46 -0.3
106,756 - HP15_103 0.47 -0.2
106,895 + HP15_103 0.56 +0.5
106,903 + HP15_103 0.56 -1.5

Or see this region's nucleotide sequence