Experiment: monoculture; Experiment B, time point 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_936 and HP15_937 are separated by 24 nucleotides HP15_937 and HP15_938 overlap by 8 nucleotides HP15_938 and HP15_939 are separated by 52 nucleotides
HP15_936: HP15_936 - transcriptional regulator, LysR family protein, at 951,248 to 952,138
_936
HP15_937: HP15_937 - spermidine/putrescine ABC transporter, permease protein, at 952,163 to 952,990
_937
HP15_938: HP15_938 - spermidine/putrescine ABC transporter, permease protein, at 952,983 to 953,864
_938
HP15_939: HP15_939 - spermidine/putrescine ABC transporter ATPase subunit, at 953,917 to 955,035
_939
Position (kb) 952
953
954 Strain fitness (log2 ratio) -2
-1
0
1
2 at 952.032 kb on + strand, within HP15_936 at 952.082 kb on + strand at 952.088 kb on - strand at 952.090 kb on - strand at 952.154 kb on - strand at 952.193 kb on - strand at 952.292 kb on - strand, within HP15_937 at 952.292 kb on - strand, within HP15_937 at 952.453 kb on + strand, within HP15_937 at 952.471 kb on - strand, within HP15_937 at 952.471 kb on - strand, within HP15_937 at 952.518 kb on + strand, within HP15_937 at 952.542 kb on - strand, within HP15_937 at 952.604 kb on + strand, within HP15_937 at 952.604 kb on + strand, within HP15_937 at 952.604 kb on + strand, within HP15_937 at 952.604 kb on + strand, within HP15_937 at 952.660 kb on + strand, within HP15_937 at 952.688 kb on + strand, within HP15_937 at 952.796 kb on + strand, within HP15_937 at 952.841 kb on + strand, within HP15_937 at 952.914 kb on + strand at 953.198 kb on + strand, within HP15_938 at 953.237 kb on + strand, within HP15_938 at 953.303 kb on + strand, within HP15_938 at 953.363 kb on - strand, within HP15_938 at 953.501 kb on + strand, within HP15_938 at 953.511 kb on - strand, within HP15_938 at 953.574 kb on + strand, within HP15_938 at 953.582 kb on - strand, within HP15_938 at 953.718 kb on - strand, within HP15_938 at 953.809 kb on - strand at 953.939 kb on - strand at 953.966 kb on - strand at 954.050 kb on - strand, within HP15_939 at 954.196 kb on - strand, within HP15_939 at 954.368 kb on + strand, within HP15_939 at 954.376 kb on - strand, within HP15_939 at 954.381 kb on - strand, within HP15_939 at 954.400 kb on + strand, within HP15_939 at 954.415 kb on - strand, within HP15_939 at 954.526 kb on - strand, within HP15_939 at 954.546 kb on - strand, within HP15_939 at 954.552 kb on - strand, within HP15_939 at 954.568 kb on + strand, within HP15_939 at 954.576 kb on - strand, within HP15_939 at 954.576 kb on - strand, within HP15_939 at 954.576 kb on - strand, within HP15_939 at 954.576 kb on - strand, within HP15_939 at 954.576 kb on - strand, within HP15_939 at 954.621 kb on + strand, within HP15_939 at 954.636 kb on - strand, within HP15_939 at 954.638 kb on - strand, within HP15_939 at 954.750 kb on - strand, within HP15_939 at 954.755 kb on - strand, within HP15_939
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 4 remove 952,032 + HP15_936 0.88 -1.2 952,082 + +1.1 952,088 - +0.2 952,090 - -0.2 952,154 - -0.7 952,193 - +1.0 952,292 - HP15_937 0.16 -0.1 952,292 - HP15_937 0.16 -0.3 952,453 + HP15_937 0.35 -0.2 952,471 - HP15_937 0.37 +0.5 952,471 - HP15_937 0.37 +0.4 952,518 + HP15_937 0.43 -0.2 952,542 - HP15_937 0.46 -1.6 952,604 + HP15_937 0.53 -0.4 952,604 + HP15_937 0.53 +0.8 952,604 + HP15_937 0.53 +0.6 952,604 + HP15_937 0.53 -0.7 952,660 + HP15_937 0.60 +0.8 952,688 + HP15_937 0.63 +1.0 952,796 + HP15_937 0.76 -0.1 952,841 + HP15_937 0.82 +0.2 952,914 + +0.7 953,198 + HP15_938 0.24 +0.5 953,237 + HP15_938 0.29 +0.9 953,303 + HP15_938 0.36 +0.7 953,363 - HP15_938 0.43 +2.0 953,501 + HP15_938 0.59 +0.9 953,511 - HP15_938 0.60 +1.7 953,574 + HP15_938 0.67 +0.9 953,582 - HP15_938 0.68 -0.6 953,718 - HP15_938 0.83 +0.6 953,809 - +1.0 953,939 - +0.7 953,966 - +0.2 954,050 - HP15_939 0.12 +0.9 954,196 - HP15_939 0.25 -1.5 954,368 + HP15_939 0.40 +1.5 954,376 - HP15_939 0.41 -0.7 954,381 - HP15_939 0.41 -0.7 954,400 + HP15_939 0.43 -0.2 954,415 - HP15_939 0.45 +0.1 954,526 - HP15_939 0.54 +0.1 954,546 - HP15_939 0.56 +1.2 954,552 - HP15_939 0.57 -0.4 954,568 + HP15_939 0.58 +0.5 954,576 - HP15_939 0.59 +0.8 954,576 - HP15_939 0.59 +1.4 954,576 - HP15_939 0.59 +1.3 954,576 - HP15_939 0.59 +0.7 954,576 - HP15_939 0.59 +0.9 954,621 + HP15_939 0.63 -0.1 954,636 - HP15_939 0.64 -1.5 954,638 - HP15_939 0.64 -0.4 954,750 - HP15_939 0.74 -2.5 954,755 - HP15_939 0.75 -0.8
Or see this region's nucleotide sequence