Experiment: monoculture; Experiment B, time point 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_859 and HP15_860 are separated by 157 nucleotides HP15_860 and HP15_861 are separated by 68 nucleotides HP15_861 and HP15_862 are separated by 178 nucleotides
HP15_859: HP15_859 - phenylpyruvate ferredoxin oxidoreductase (EC 1.2.7.8) <small>(from data)</small>, at 876,360 to 879,878
_859
HP15_860: HP15_860 - transcriptional regulator, AsnC family protein, at 880,036 to 880,515
_860
HP15_861: HP15_861 - cold shock, CspA, at 880,584 to 880,814
_861
HP15_862: HP15_862 - signal transduction protein containing a membrane domain, an EAL and a GGDEF domain, at 880,993 to 884,754
_862
Position (kb) 880
881 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 879.700 kb on + strand at 879.703 kb on - strand at 879.712 kb on + strand at 879.720 kb on - strand at 879.732 kb on + strand at 879.750 kb on + strand at 879.750 kb on + strand at 879.842 kb on - strand at 880.172 kb on - strand, within HP15_860 at 880.177 kb on - strand, within HP15_860 at 880.177 kb on - strand, within HP15_860 at 880.202 kb on + strand, within HP15_860 at 880.208 kb on - strand, within HP15_860 at 880.300 kb on - strand, within HP15_860 at 880.334 kb on + strand, within HP15_860 at 880.335 kb on - strand, within HP15_860 at 880.370 kb on + strand, within HP15_860 at 880.370 kb on + strand, within HP15_860 at 880.370 kb on + strand, within HP15_860 at 880.378 kb on - strand, within HP15_860 at 880.378 kb on - strand, within HP15_860 at 880.378 kb on - strand, within HP15_860 at 880.394 kb on + strand, within HP15_860 at 880.620 kb on - strand, within HP15_861 at 880.848 kb on + strand at 880.909 kb on - strand at 880.961 kb on + strand at 880.972 kb on - strand at 881.033 kb on + strand at 881.043 kb on + strand at 881.089 kb on + strand at 881.100 kb on + strand at 881.108 kb on - strand at 881.108 kb on - strand at 881.134 kb on - strand at 881.154 kb on - strand at 881.386 kb on + strand, within HP15_862 at 881.394 kb on - strand, within HP15_862 at 881.397 kb on + strand, within HP15_862 at 881.548 kb on + strand, within HP15_862 at 881.607 kb on - strand, within HP15_862 at 881.623 kb on - strand, within HP15_862 at 881.623 kb on - strand, within HP15_862 at 881.623 kb on - strand, within HP15_862 at 881.732 kb on - strand, within HP15_862 at 881.738 kb on - strand, within HP15_862 at 881.780 kb on - strand, within HP15_862 at 881.783 kb on + strand, within HP15_862
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 4 remove 879,700 + -0.7 879,703 - -0.3 879,712 + +0.3 879,720 - -0.3 879,732 + -1.3 879,750 + +1.0 879,750 + -0.7 879,842 - -0.4 880,172 - HP15_860 0.28 -0.9 880,177 - HP15_860 0.29 +0.4 880,177 - HP15_860 0.29 +0.2 880,202 + HP15_860 0.35 -0.7 880,208 - HP15_860 0.36 -1.9 880,300 - HP15_860 0.55 -0.6 880,334 + HP15_860 0.62 -0.0 880,335 - HP15_860 0.62 -0.1 880,370 + HP15_860 0.70 +0.7 880,370 + HP15_860 0.70 +1.4 880,370 + HP15_860 0.70 -0.2 880,378 - HP15_860 0.71 -0.1 880,378 - HP15_860 0.71 -0.5 880,378 - HP15_860 0.71 +1.0 880,394 + HP15_860 0.75 +1.1 880,620 - HP15_861 0.16 +1.6 880,848 + +1.1 880,909 - -1.1 880,961 + +1.4 880,972 - +0.5 881,033 + +1.3 881,043 + -0.4 881,089 + +0.1 881,100 + -0.3 881,108 - +0.8 881,108 - +0.9 881,134 - -0.5 881,154 - -0.7 881,386 + HP15_862 0.10 +0.2 881,394 - HP15_862 0.11 -1.2 881,397 + HP15_862 0.11 +0.2 881,548 + HP15_862 0.15 +1.1 881,607 - HP15_862 0.16 +0.8 881,623 - HP15_862 0.17 -0.4 881,623 - HP15_862 0.17 -0.7 881,623 - HP15_862 0.17 -3.0 881,732 - HP15_862 0.20 -0.3 881,738 - HP15_862 0.20 -0.4 881,780 - HP15_862 0.21 -0.1 881,783 + HP15_862 0.21 -1.1
Or see this region's nucleotide sequence