Experiment: monoculture; Experiment B, time point 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_842 and HP15_843 are separated by 40 nucleotides HP15_843 and HP15_844 are separated by 3 nucleotides HP15_844 and HP15_845 are separated by 226 nucleotides
HP15_842: HP15_842 - phosphoglycerate mutase family protein, at 861,525 to 862,097
_842
HP15_843: HP15_843 - PhnA protein, at 862,138 to 862,476
_843
HP15_844: HP15_844 - protein containing DUF533, at 862,480 to 863,199
_844
HP15_845: HP15_845 - sensory box/GGDEF family protein, at 863,426 to 865,702
_845
Position (kb) 862
863
864 Strain fitness (log2 ratio) -2
-1
0
1
2 at 861.614 kb on - strand, within HP15_842 at 861.636 kb on + strand, within HP15_842 at 861.636 kb on + strand, within HP15_842 at 861.654 kb on + strand, within HP15_842 at 861.751 kb on - strand, within HP15_842 at 861.778 kb on + strand, within HP15_842 at 861.999 kb on - strand, within HP15_842 at 861.999 kb on - strand, within HP15_842 at 862.068 kb on + strand at 862.154 kb on - strand at 862.198 kb on + strand, within HP15_843 at 862.203 kb on + strand, within HP15_843 at 862.343 kb on - strand, within HP15_843 at 862.522 kb on + strand at 862.573 kb on - strand, within HP15_844 at 862.633 kb on + strand, within HP15_844 at 862.644 kb on + strand, within HP15_844 at 862.665 kb on - strand, within HP15_844 at 862.670 kb on - strand, within HP15_844 at 862.670 kb on - strand, within HP15_844 at 862.682 kb on - strand, within HP15_844 at 862.796 kb on + strand, within HP15_844 at 862.841 kb on + strand, within HP15_844 at 862.841 kb on - strand, within HP15_844 at 863.000 kb on - strand, within HP15_844 at 863.092 kb on - strand, within HP15_844 at 863.106 kb on - strand, within HP15_844 at 863.132 kb on - strand at 863.146 kb on - strand at 863.153 kb on + strand at 863.161 kb on - strand at 863.184 kb on - strand at 863.372 kb on + strand at 863.380 kb on - strand at 863.463 kb on + strand at 863.499 kb on - strand at 863.504 kb on - strand at 863.564 kb on - strand at 863.578 kb on + strand at 863.627 kb on - strand at 863.695 kb on + strand, within HP15_845 at 863.794 kb on + strand, within HP15_845 at 863.896 kb on + strand, within HP15_845 at 863.903 kb on - strand, within HP15_845 at 863.904 kb on - strand, within HP15_845 at 864.000 kb on - strand, within HP15_845 at 864.002 kb on + strand, within HP15_845 at 864.024 kb on + strand, within HP15_845 at 864.092 kb on - strand, within HP15_845 at 864.138 kb on + strand, within HP15_845 at 864.168 kb on + strand, within HP15_845 at 864.168 kb on + strand, within HP15_845
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 4 remove 861,614 - HP15_842 0.16 +0.3 861,636 + HP15_842 0.19 -0.0 861,636 + HP15_842 0.19 -1.0 861,654 + HP15_842 0.23 -0.9 861,751 - HP15_842 0.39 -0.5 861,778 + HP15_842 0.44 -0.3 861,999 - HP15_842 0.83 -0.6 861,999 - HP15_842 0.83 +2.7 862,068 + -0.6 862,154 - +1.0 862,198 + HP15_843 0.18 +0.6 862,203 + HP15_843 0.19 +0.8 862,343 - HP15_843 0.60 +0.4 862,522 + -0.9 862,573 - HP15_844 0.13 -0.2 862,633 + HP15_844 0.21 -0.4 862,644 + HP15_844 0.23 -0.4 862,665 - HP15_844 0.26 -0.2 862,670 - HP15_844 0.26 -0.7 862,670 - HP15_844 0.26 +0.8 862,682 - HP15_844 0.28 -0.5 862,796 + HP15_844 0.44 -0.5 862,841 + HP15_844 0.50 +1.1 862,841 - HP15_844 0.50 -1.5 863,000 - HP15_844 0.72 -0.0 863,092 - HP15_844 0.85 -1.2 863,106 - HP15_844 0.87 -0.0 863,132 - -0.5 863,146 - +1.0 863,153 + -0.2 863,161 - +0.4 863,184 - +1.6 863,372 + +1.0 863,380 - +0.3 863,463 + +0.8 863,499 - +0.8 863,504 - +1.9 863,564 - -2.0 863,578 + -1.0 863,627 - -0.7 863,695 + HP15_845 0.12 +1.0 863,794 + HP15_845 0.16 -0.3 863,896 + HP15_845 0.21 +0.6 863,903 - HP15_845 0.21 +0.6 863,904 - HP15_845 0.21 +0.6 864,000 - HP15_845 0.25 -0.1 864,002 + HP15_845 0.25 -0.7 864,024 + HP15_845 0.26 -0.5 864,092 - HP15_845 0.29 +0.2 864,138 + HP15_845 0.31 +2.0 864,168 + HP15_845 0.33 +1.1 864,168 + HP15_845 0.33 +1.0
Or see this region's nucleotide sequence