Strain Fitness in Marinobacter adhaerens HP15 around HP15_837

Experiment: monoculture; Experiment B, time point 4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_836 and HP15_837 overlap by 14 nucleotidesHP15_837 and HP15_838 are separated by 49 nucleotidesHP15_838 and HP15_839 overlap by 11 nucleotides HP15_836: HP15_836 - conserved hypothetical protein, at 854,288 to 855,109 _836 HP15_837: HP15_837 - iron-hydroxamate transporter permease subunit, at 855,096 to 857,066 _837 HP15_838: HP15_838 - ABC-type Fe3+-hydroxamate transport system, periplasmic component, at 857,116 to 858,051 _838 HP15_839: HP15_839 - iron-hydroxamate transporter ATP-binding subunit, at 858,041 to 858,814 _839 Position (kb) 855 856 857 858Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 854.131 kb on - strandat 854.142 kb on + strandat 854.276 kb on + strandat 854.326 kb on + strandat 854.439 kb on + strand, within HP15_836at 854.467 kb on - strand, within HP15_836at 854.524 kb on - strand, within HP15_836at 854.524 kb on - strand, within HP15_836at 854.573 kb on - strand, within HP15_836at 854.590 kb on + strand, within HP15_836at 854.608 kb on - strand, within HP15_836at 854.644 kb on - strand, within HP15_836at 854.646 kb on + strand, within HP15_836at 854.894 kb on - strand, within HP15_836at 855.027 kb on - strandat 855.029 kb on + strandat 855.029 kb on + strandat 855.081 kb on + strandat 855.095 kb on - strandat 855.126 kb on + strandat 855.144 kb on + strandat 855.408 kb on - strand, within HP15_837at 855.450 kb on - strand, within HP15_837at 855.472 kb on - strand, within HP15_837at 855.512 kb on - strand, within HP15_837at 855.594 kb on - strand, within HP15_837at 855.769 kb on + strand, within HP15_837at 855.822 kb on + strand, within HP15_837at 855.831 kb on - strand, within HP15_837at 855.848 kb on + strand, within HP15_837at 855.867 kb on + strand, within HP15_837at 855.872 kb on + strand, within HP15_837at 855.875 kb on - strand, within HP15_837at 855.875 kb on - strand, within HP15_837at 855.875 kb on - strand, within HP15_837at 855.875 kb on - strand, within HP15_837at 855.880 kb on - strand, within HP15_837at 855.880 kb on - strand, within HP15_837at 855.966 kb on - strand, within HP15_837at 855.990 kb on - strand, within HP15_837at 856.023 kb on + strand, within HP15_837at 856.031 kb on - strand, within HP15_837at 856.093 kb on - strand, within HP15_837at 856.210 kb on - strand, within HP15_837at 856.230 kb on + strand, within HP15_837at 856.337 kb on - strand, within HP15_837at 856.365 kb on + strand, within HP15_837at 856.365 kb on + strand, within HP15_837at 856.422 kb on + strand, within HP15_837at 856.422 kb on + strand, within HP15_837at 856.427 kb on + strand, within HP15_837at 856.435 kb on - strand, within HP15_837at 856.442 kb on - strand, within HP15_837at 856.517 kb on - strand, within HP15_837at 856.652 kb on + strand, within HP15_837at 856.770 kb on + strand, within HP15_837at 856.820 kb on + strand, within HP15_837at 856.828 kb on - strand, within HP15_837at 857.006 kb on + strandat 857.014 kb on - strandat 857.052 kb on - strandat 857.272 kb on + strand, within HP15_838at 857.279 kb on + strand, within HP15_838at 857.334 kb on - strand, within HP15_838at 857.334 kb on - strand, within HP15_838at 857.384 kb on + strand, within HP15_838at 857.398 kb on - strand, within HP15_838at 857.406 kb on + strand, within HP15_838at 857.414 kb on - strand, within HP15_838at 857.414 kb on - strand, within HP15_838at 857.414 kb on - strand, within HP15_838at 857.617 kb on - strand, within HP15_838at 857.648 kb on - strand, within HP15_838at 857.648 kb on - strand, within HP15_838at 857.669 kb on + strand, within HP15_838at 857.674 kb on + strand, within HP15_838at 857.697 kb on + strand, within HP15_838at 857.697 kb on + strand, within HP15_838at 857.828 kb on - strand, within HP15_838at 857.865 kb on + strand, within HP15_838at 857.908 kb on - strand, within HP15_838at 857.940 kb on + strand, within HP15_838at 857.948 kb on - strand, within HP15_838

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 4
remove
854,131 - +1.0
854,142 + -0.2
854,276 + -0.4
854,326 + -0.2
854,439 + HP15_836 0.18 +0.3
854,467 - HP15_836 0.22 +0.6
854,524 - HP15_836 0.29 -0.6
854,524 - HP15_836 0.29 +0.2
854,573 - HP15_836 0.35 +0.1
854,590 + HP15_836 0.37 +0.4
854,608 - HP15_836 0.39 -1.9
854,644 - HP15_836 0.43 +0.3
854,646 + HP15_836 0.44 +0.9
854,894 - HP15_836 0.74 +1.4
855,027 - -0.8
855,029 + +0.0
855,029 + +1.0
855,081 + -0.6
855,095 - -0.4
855,126 + -0.1
855,144 + +0.9
855,408 - HP15_837 0.16 +0.4
855,450 - HP15_837 0.18 -0.7
855,472 - HP15_837 0.19 -0.4
855,512 - HP15_837 0.21 -0.3
855,594 - HP15_837 0.25 +0.8
855,769 + HP15_837 0.34 -1.1
855,822 + HP15_837 0.37 -0.3
855,831 - HP15_837 0.37 +0.1
855,848 + HP15_837 0.38 -0.8
855,867 + HP15_837 0.39 +0.3
855,872 + HP15_837 0.39 +0.1
855,875 - HP15_837 0.40 +0.6
855,875 - HP15_837 0.40 +0.1
855,875 - HP15_837 0.40 -0.4
855,875 - HP15_837 0.40 +0.9
855,880 - HP15_837 0.40 -2.7
855,880 - HP15_837 0.40 +0.8
855,966 - HP15_837 0.44 +0.9
855,990 - HP15_837 0.45 -0.7
856,023 + HP15_837 0.47 +0.1
856,031 - HP15_837 0.47 +2.2
856,093 - HP15_837 0.51 +0.5
856,210 - HP15_837 0.57 -0.2
856,230 + HP15_837 0.58 -0.2
856,337 - HP15_837 0.63 -0.4
856,365 + HP15_837 0.64 -2.9
856,365 + HP15_837 0.64 -0.2
856,422 + HP15_837 0.67 -0.9
856,422 + HP15_837 0.67 +0.2
856,427 + HP15_837 0.68 -0.4
856,435 - HP15_837 0.68 -0.5
856,442 - HP15_837 0.68 +0.8
856,517 - HP15_837 0.72 -0.5
856,652 + HP15_837 0.79 -0.1
856,770 + HP15_837 0.85 +1.1
856,820 + HP15_837 0.87 +1.2
856,828 - HP15_837 0.88 +1.3
857,006 + +0.6
857,014 - -0.2
857,052 - -0.7
857,272 + HP15_838 0.17 +0.4
857,279 + HP15_838 0.17 +0.2
857,334 - HP15_838 0.23 -2.1
857,334 - HP15_838 0.23 +0.1
857,384 + HP15_838 0.29 +0.4
857,398 - HP15_838 0.30 -0.6
857,406 + HP15_838 0.31 -0.1
857,414 - HP15_838 0.32 +0.2
857,414 - HP15_838 0.32 -1.1
857,414 - HP15_838 0.32 -0.3
857,617 - HP15_838 0.54 +0.4
857,648 - HP15_838 0.57 +0.9
857,648 - HP15_838 0.57 +1.1
857,669 + HP15_838 0.59 +0.1
857,674 + HP15_838 0.60 +0.7
857,697 + HP15_838 0.62 -0.7
857,697 + HP15_838 0.62 -0.2
857,828 - HP15_838 0.76 -2.1
857,865 + HP15_838 0.80 +0.6
857,908 - HP15_838 0.85 +0.6
857,940 + HP15_838 0.88 +0.9
857,948 - HP15_838 0.89 +1.6

Or see this region's nucleotide sequence