Experiment: monoculture; Experiment B, time point 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_432 and HP15_433 are separated by 93 nucleotides HP15_433 and HP15_434 are separated by 27 nucleotides HP15_434 and HP15_435 are separated by 80 nucleotides
HP15_432: HP15_432 - outer membrane protein (porin), at 432,095 to 433,102
_432
HP15_433: HP15_433 - adenylate cyclase, at 433,196 to 434,059
_433
HP15_434: HP15_434 - potassium channel protein, at 434,087 to 435,268
_434
HP15_435: HP15_435 - glutamate-ammonia-ligase adenylyltransferase, at 435,349 to 438,255
_435
Position (kb) 434
435
436 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 433.236 kb on + strand at 433.261 kb on - strand at 433.261 kb on - strand at 433.288 kb on + strand, within HP15_433 at 433.348 kb on + strand, within HP15_433 at 433.348 kb on + strand, within HP15_433 at 433.348 kb on + strand, within HP15_433 at 433.361 kb on - strand, within HP15_433 at 433.406 kb on - strand, within HP15_433 at 433.445 kb on + strand, within HP15_433 at 433.649 kb on + strand, within HP15_433 at 433.689 kb on + strand, within HP15_433 at 433.689 kb on + strand, within HP15_433 at 433.689 kb on + strand, within HP15_433 at 433.689 kb on + strand, within HP15_433 at 433.697 kb on - strand, within HP15_433 at 433.697 kb on - strand, within HP15_433 at 433.697 kb on - strand, within HP15_433 at 433.697 kb on - strand, within HP15_433 at 433.758 kb on + strand, within HP15_433 at 433.784 kb on + strand, within HP15_433 at 433.792 kb on - strand, within HP15_433 at 433.812 kb on - strand, within HP15_433 at 434.001 kb on + strand at 434.183 kb on + strand at 434.191 kb on - strand at 434.217 kb on - strand, within HP15_434 at 434.388 kb on - strand, within HP15_434 at 434.428 kb on - strand, within HP15_434 at 434.500 kb on + strand, within HP15_434 at 434.524 kb on + strand, within HP15_434 at 434.632 kb on - strand, within HP15_434 at 434.869 kb on + strand, within HP15_434 at 434.869 kb on + strand, within HP15_434 at 434.877 kb on - strand, within HP15_434 at 434.877 kb on - strand, within HP15_434 at 435.092 kb on - strand, within HP15_434 at 435.110 kb on - strand, within HP15_434 at 435.112 kb on + strand, within HP15_434 at 435.112 kb on + strand, within HP15_434 at 435.127 kb on - strand, within HP15_434 at 435.304 kb on + strand at 435.339 kb on + strand at 435.339 kb on + strand at 435.491 kb on + strand at 435.491 kb on + strand at 435.545 kb on - strand at 435.581 kb on - strand at 435.828 kb on + strand, within HP15_435 at 435.876 kb on + strand, within HP15_435 at 435.876 kb on + strand, within HP15_435 at 435.896 kb on + strand, within HP15_435 at 436.004 kb on + strand, within HP15_435 at 436.028 kb on - strand, within HP15_435 at 436.098 kb on - strand, within HP15_435
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 4 remove 433,236 + +0.5 433,261 - -0.5 433,261 - -0.2 433,288 + HP15_433 0.11 -0.8 433,348 + HP15_433 0.18 -1.3 433,348 + HP15_433 0.18 +1.2 433,348 + HP15_433 0.18 -0.6 433,361 - HP15_433 0.19 +1.2 433,406 - HP15_433 0.24 -0.0 433,445 + HP15_433 0.29 +1.5 433,649 + HP15_433 0.52 +1.3 433,689 + HP15_433 0.57 -0.4 433,689 + HP15_433 0.57 -0.1 433,689 + HP15_433 0.57 -0.6 433,689 + HP15_433 0.57 +0.2 433,697 - HP15_433 0.58 +1.0 433,697 - HP15_433 0.58 -0.0 433,697 - HP15_433 0.58 -0.3 433,697 - HP15_433 0.58 -0.7 433,758 + HP15_433 0.65 -0.9 433,784 + HP15_433 0.68 +0.5 433,792 - HP15_433 0.69 -0.1 433,812 - HP15_433 0.71 -3.0 434,001 + -0.1 434,183 + -0.1 434,191 - +1.5 434,217 - HP15_434 0.11 -0.6 434,388 - HP15_434 0.25 -0.1 434,428 - HP15_434 0.29 -0.1 434,500 + HP15_434 0.35 -0.2 434,524 + HP15_434 0.37 -0.0 434,632 - HP15_434 0.46 +1.2 434,869 + HP15_434 0.66 -1.3 434,869 + HP15_434 0.66 -0.2 434,877 - HP15_434 0.67 +1.0 434,877 - HP15_434 0.67 -0.3 435,092 - HP15_434 0.85 -0.1 435,110 - HP15_434 0.87 +0.8 435,112 + HP15_434 0.87 -0.3 435,112 + HP15_434 0.87 +0.0 435,127 - HP15_434 0.88 -0.8 435,304 + +1.3 435,339 + +1.4 435,339 + -0.5 435,491 + -1.0 435,491 + -1.3 435,545 - -1.3 435,581 - -1.4 435,828 + HP15_435 0.16 -0.3 435,876 + HP15_435 0.18 -2.6 435,876 + HP15_435 0.18 -1.6 435,896 + HP15_435 0.19 -1.5 436,004 + HP15_435 0.23 -2.9 436,028 - HP15_435 0.23 -0.9 436,098 - HP15_435 0.26 -3.9
Or see this region's nucleotide sequence