Experiment: monoculture; Experiment B, time point 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_p187g107 and HP15_p187g108 are separated by 44 nucleotides HP15_p187g108 and HP15_p187g109 are separated by 91 nucleotides HP15_p187g109 and HP15_p187g110 overlap by 4 nucleotides
HP15_p187g107: HP15_p187g107 - conserved hypothetical protein, membrane, at 101,264 to 102,328
_p187g107
HP15_p187g108: HP15_p187g108 - conserved hypothetical protein, at 102,373 to 103,455
_p187g108
HP15_p187g109: HP15_p187g109 - conserved hypothetical protein, secreted, at 103,547 to 103,792
_p187g109
HP15_p187g110: HP15_p187g110 - conserved hypothetical protein, at 103,789 to 105,543
_p187g110
Position (kb) 102
103
104 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 101.390 kb on - strand, within HP15_p187g107 at 101.413 kb on + strand, within HP15_p187g107 at 101.413 kb on + strand, within HP15_p187g107 at 101.421 kb on - strand, within HP15_p187g107 at 101.421 kb on - strand, within HP15_p187g107 at 101.421 kb on - strand, within HP15_p187g107 at 101.432 kb on + strand, within HP15_p187g107 at 101.459 kb on + strand, within HP15_p187g107 at 101.478 kb on - strand, within HP15_p187g107 at 101.482 kb on + strand, within HP15_p187g107 at 101.610 kb on + strand, within HP15_p187g107 at 101.610 kb on + strand, within HP15_p187g107 at 101.610 kb on + strand, within HP15_p187g107 at 101.618 kb on - strand, within HP15_p187g107 at 101.618 kb on - strand, within HP15_p187g107 at 101.625 kb on + strand, within HP15_p187g107 at 101.633 kb on - strand, within HP15_p187g107 at 101.642 kb on + strand, within HP15_p187g107 at 101.650 kb on - strand, within HP15_p187g107 at 101.682 kb on - strand, within HP15_p187g107 at 101.689 kb on - strand, within HP15_p187g107 at 101.715 kb on + strand, within HP15_p187g107 at 101.715 kb on + strand, within HP15_p187g107 at 101.723 kb on - strand, within HP15_p187g107 at 101.723 kb on - strand, within HP15_p187g107 at 101.745 kb on + strand, within HP15_p187g107 at 101.834 kb on + strand, within HP15_p187g107 at 101.837 kb on - strand, within HP15_p187g107 at 101.842 kb on - strand, within HP15_p187g107 at 101.915 kb on - strand, within HP15_p187g107 at 101.960 kb on - strand, within HP15_p187g107 at 102.012 kb on - strand, within HP15_p187g107 at 102.048 kb on - strand, within HP15_p187g107 at 102.067 kb on + strand, within HP15_p187g107 at 102.070 kb on - strand, within HP15_p187g107 at 102.084 kb on + strand, within HP15_p187g107 at 102.114 kb on + strand, within HP15_p187g107 at 102.203 kb on - strand, within HP15_p187g107 at 102.213 kb on - strand, within HP15_p187g107 at 102.238 kb on + strand at 102.238 kb on + strand at 102.238 kb on + strand at 102.238 kb on + strand at 102.238 kb on + strand at 102.241 kb on - strand at 102.246 kb on - strand at 102.246 kb on - strand at 102.246 kb on - strand at 102.253 kb on - strand at 102.311 kb on + strand at 102.370 kb on - strand at 102.383 kb on + strand at 102.383 kb on + strand at 102.391 kb on - strand at 102.391 kb on - strand at 102.453 kb on - strand at 102.461 kb on + strand at 102.520 kb on - strand, within HP15_p187g108 at 102.520 kb on - strand, within HP15_p187g108 at 102.537 kb on + strand, within HP15_p187g108 at 102.542 kb on + strand, within HP15_p187g108 at 102.542 kb on + strand, within HP15_p187g108 at 102.545 kb on - strand, within HP15_p187g108 at 102.550 kb on - strand, within HP15_p187g108 at 102.550 kb on - strand, within HP15_p187g108 at 102.550 kb on - strand, within HP15_p187g108 at 102.550 kb on - strand, within HP15_p187g108 at 102.551 kb on + strand, within HP15_p187g108 at 102.582 kb on + strand, within HP15_p187g108 at 102.583 kb on - strand, within HP15_p187g108 at 102.587 kb on + strand, within HP15_p187g108 at 102.590 kb on - strand, within HP15_p187g108 at 102.592 kb on + strand, within HP15_p187g108 at 102.597 kb on - strand, within HP15_p187g108 at 102.599 kb on + strand, within HP15_p187g108 at 102.600 kb on - strand, within HP15_p187g108 at 102.602 kb on + strand, within HP15_p187g108 at 102.602 kb on - strand, within HP15_p187g108 at 102.602 kb on - strand, within HP15_p187g108 at 102.641 kb on - strand, within HP15_p187g108 at 102.641 kb on - strand, within HP15_p187g108 at 102.660 kb on + strand, within HP15_p187g108 at 102.704 kb on - strand, within HP15_p187g108 at 102.731 kb on + strand, within HP15_p187g108 at 102.745 kb on - strand, within HP15_p187g108 at 102.822 kb on - strand, within HP15_p187g108 at 102.835 kb on - strand, within HP15_p187g108 at 102.837 kb on - strand, within HP15_p187g108 at 102.837 kb on - strand, within HP15_p187g108 at 102.858 kb on - strand, within HP15_p187g108 at 102.882 kb on - strand, within HP15_p187g108 at 102.889 kb on - strand, within HP15_p187g108 at 102.920 kb on + strand, within HP15_p187g108 at 102.920 kb on + strand, within HP15_p187g108 at 102.920 kb on + strand, within HP15_p187g108 at 102.928 kb on - strand, within HP15_p187g108 at 102.928 kb on - strand, within HP15_p187g108 at 102.938 kb on - strand, within HP15_p187g108 at 102.945 kb on + strand, within HP15_p187g108 at 102.948 kb on - strand, within HP15_p187g108 at 102.960 kb on + strand, within HP15_p187g108 at 102.963 kb on - strand, within HP15_p187g108 at 102.968 kb on - strand, within HP15_p187g108 at 102.968 kb on - strand, within HP15_p187g108 at 102.980 kb on + strand, within HP15_p187g108 at 102.980 kb on + strand, within HP15_p187g108 at 102.985 kb on + strand, within HP15_p187g108 at 102.993 kb on - strand, within HP15_p187g108 at 102.993 kb on - strand, within HP15_p187g108 at 103.015 kb on + strand, within HP15_p187g108 at 103.053 kb on - strand, within HP15_p187g108 at 103.090 kb on + strand, within HP15_p187g108 at 103.169 kb on + strand, within HP15_p187g108 at 103.177 kb on + strand, within HP15_p187g108 at 103.177 kb on + strand, within HP15_p187g108 at 103.177 kb on + strand, within HP15_p187g108 at 103.177 kb on - strand, within HP15_p187g108 at 103.236 kb on + strand, within HP15_p187g108 at 103.237 kb on - strand, within HP15_p187g108 at 103.244 kb on + strand, within HP15_p187g108 at 103.262 kb on - strand, within HP15_p187g108 at 103.279 kb on - strand, within HP15_p187g108 at 103.299 kb on + strand, within HP15_p187g108 at 103.349 kb on - strand at 103.354 kb on - strand at 103.375 kb on - strand at 103.434 kb on + strand at 103.489 kb on - strand at 103.491 kb on + strand at 103.491 kb on + strand at 103.491 kb on + strand at 103.499 kb on - strand at 103.499 kb on - strand at 103.499 kb on - strand at 103.501 kb on + strand at 103.501 kb on + strand at 103.501 kb on + strand at 103.509 kb on - strand at 103.509 kb on - strand at 103.509 kb on - strand at 103.509 kb on - strand at 103.529 kb on - strand at 103.545 kb on + strand at 103.545 kb on + strand at 103.545 kb on + strand at 103.545 kb on + strand at 103.553 kb on - strand at 103.632 kb on + strand, within HP15_p187g109 at 103.632 kb on + strand, within HP15_p187g109 at 103.641 kb on - strand, within HP15_p187g109 at 103.652 kb on + strand, within HP15_p187g109 at 103.690 kb on + strand, within HP15_p187g109 at 103.711 kb on - strand, within HP15_p187g109 at 103.769 kb on - strand at 103.769 kb on - strand at 103.774 kb on + strand at 103.812 kb on + strand at 103.869 kb on + strand at 103.877 kb on - strand at 103.879 kb on + strand at 103.911 kb on - strand at 103.938 kb on - strand at 104.079 kb on - strand, within HP15_p187g110 at 104.112 kb on + strand, within HP15_p187g110 at 104.122 kb on + strand, within HP15_p187g110 at 104.122 kb on + strand, within HP15_p187g110 at 104.122 kb on + strand, within HP15_p187g110 at 104.130 kb on - strand, within HP15_p187g110 at 104.238 kb on - strand, within HP15_p187g110 at 104.340 kb on - strand, within HP15_p187g110 at 104.378 kb on + strand, within HP15_p187g110 at 104.386 kb on + strand, within HP15_p187g110 at 104.394 kb on - strand, within HP15_p187g110 at 104.394 kb on - strand, within HP15_p187g110 at 104.394 kb on - strand, within HP15_p187g110 at 104.421 kb on + strand, within HP15_p187g110 at 104.429 kb on - strand, within HP15_p187g110 at 104.429 kb on - strand, within HP15_p187g110 at 104.451 kb on + strand, within HP15_p187g110
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 4 remove 101,390 - HP15_p187g107 0.12 +1.1 101,413 + HP15_p187g107 0.14 +0.1 101,413 + HP15_p187g107 0.14 -0.0 101,421 - HP15_p187g107 0.15 +1.5 101,421 - HP15_p187g107 0.15 +0.2 101,421 - HP15_p187g107 0.15 -2.4 101,432 + HP15_p187g107 0.16 +0.7 101,459 + HP15_p187g107 0.18 +1.0 101,478 - HP15_p187g107 0.20 +0.8 101,482 + HP15_p187g107 0.20 -0.2 101,610 + HP15_p187g107 0.32 +2.4 101,610 + HP15_p187g107 0.32 -1.3 101,610 + HP15_p187g107 0.32 -0.6 101,618 - HP15_p187g107 0.33 +1.0 101,618 - HP15_p187g107 0.33 +0.9 101,625 + HP15_p187g107 0.34 -1.4 101,633 - HP15_p187g107 0.35 -0.5 101,642 + HP15_p187g107 0.35 +1.2 101,650 - HP15_p187g107 0.36 -0.4 101,682 - HP15_p187g107 0.39 +1.2 101,689 - HP15_p187g107 0.40 -0.6 101,715 + HP15_p187g107 0.42 -0.9 101,715 + HP15_p187g107 0.42 +0.1 101,723 - HP15_p187g107 0.43 +0.6 101,723 - HP15_p187g107 0.43 +1.4 101,745 + HP15_p187g107 0.45 +1.3 101,834 + HP15_p187g107 0.54 -1.0 101,837 - HP15_p187g107 0.54 +0.2 101,842 - HP15_p187g107 0.54 +2.1 101,915 - HP15_p187g107 0.61 -0.4 101,960 - HP15_p187g107 0.65 -0.4 102,012 - HP15_p187g107 0.70 -1.0 102,048 - HP15_p187g107 0.74 +1.4 102,067 + HP15_p187g107 0.75 -0.1 102,070 - HP15_p187g107 0.76 -1.2 102,084 + HP15_p187g107 0.77 +0.2 102,114 + HP15_p187g107 0.80 +0.4 102,203 - HP15_p187g107 0.88 +0.8 102,213 - HP15_p187g107 0.89 -0.4 102,238 + +0.0 102,238 + -0.0 102,238 + +1.3 102,238 + +1.4 102,238 + +0.1 102,241 - +1.1 102,246 - +0.1 102,246 - -0.0 102,246 - -0.1 102,253 - +1.6 102,311 + -0.9 102,370 - +1.6 102,383 + +0.0 102,383 + -0.9 102,391 - -0.3 102,391 - +0.3 102,453 - -2.3 102,461 + +1.3 102,520 - HP15_p187g108 0.14 +1.1 102,520 - HP15_p187g108 0.14 +0.1 102,537 + HP15_p187g108 0.15 +0.1 102,542 + HP15_p187g108 0.16 +1.0 102,542 + HP15_p187g108 0.16 +0.3 102,545 - HP15_p187g108 0.16 +1.0 102,550 - HP15_p187g108 0.16 -0.4 102,550 - HP15_p187g108 0.16 +0.8 102,550 - HP15_p187g108 0.16 +1.0 102,550 - HP15_p187g108 0.16 +0.1 102,551 + HP15_p187g108 0.16 -1.0 102,582 + HP15_p187g108 0.19 +0.8 102,583 - HP15_p187g108 0.19 +2.8 102,587 + HP15_p187g108 0.20 -0.3 102,590 - HP15_p187g108 0.20 -1.3 102,592 + HP15_p187g108 0.20 +0.3 102,597 - HP15_p187g108 0.21 -0.2 102,599 + HP15_p187g108 0.21 -0.5 102,600 - HP15_p187g108 0.21 -0.4 102,602 + HP15_p187g108 0.21 -0.9 102,602 - HP15_p187g108 0.21 +0.7 102,602 - HP15_p187g108 0.21 +0.1 102,641 - HP15_p187g108 0.25 +1.3 102,641 - HP15_p187g108 0.25 -1.6 102,660 + HP15_p187g108 0.27 +1.0 102,704 - HP15_p187g108 0.31 +0.7 102,731 + HP15_p187g108 0.33 +0.8 102,745 - HP15_p187g108 0.34 +0.8 102,822 - HP15_p187g108 0.41 -0.0 102,835 - HP15_p187g108 0.43 +0.6 102,837 - HP15_p187g108 0.43 -0.4 102,837 - HP15_p187g108 0.43 +0.9 102,858 - HP15_p187g108 0.45 -0.0 102,882 - HP15_p187g108 0.47 -0.1 102,889 - HP15_p187g108 0.48 -0.3 102,920 + HP15_p187g108 0.51 -0.2 102,920 + HP15_p187g108 0.51 -0.0 102,920 + HP15_p187g108 0.51 +0.4 102,928 - HP15_p187g108 0.51 +1.1 102,928 - HP15_p187g108 0.51 +0.9 102,938 - HP15_p187g108 0.52 -0.2 102,945 + HP15_p187g108 0.53 +0.7 102,948 - HP15_p187g108 0.53 +0.4 102,960 + HP15_p187g108 0.54 -1.1 102,963 - HP15_p187g108 0.54 +0.1 102,968 - HP15_p187g108 0.55 +1.8 102,968 - HP15_p187g108 0.55 -0.1 102,980 + HP15_p187g108 0.56 -0.1 102,980 + HP15_p187g108 0.56 +0.8 102,985 + HP15_p187g108 0.57 +1.0 102,993 - HP15_p187g108 0.57 -1.6 102,993 - HP15_p187g108 0.57 +1.2 103,015 + HP15_p187g108 0.59 -0.0 103,053 - HP15_p187g108 0.63 -1.5 103,090 + HP15_p187g108 0.66 +1.3 103,169 + HP15_p187g108 0.73 +1.3 103,177 + HP15_p187g108 0.74 +0.2 103,177 + HP15_p187g108 0.74 +0.1 103,177 + HP15_p187g108 0.74 -0.0 103,177 - HP15_p187g108 0.74 -0.2 103,236 + HP15_p187g108 0.80 -0.4 103,237 - HP15_p187g108 0.80 -0.1 103,244 + HP15_p187g108 0.80 -0.1 103,262 - HP15_p187g108 0.82 +1.0 103,279 - HP15_p187g108 0.84 -0.3 103,299 + HP15_p187g108 0.86 +0.4 103,349 - +0.1 103,354 - -1.4 103,375 - +0.4 103,434 + +1.1 103,489 - +0.6 103,491 + +0.1 103,491 + +0.9 103,491 + -0.2 103,499 - -0.2 103,499 - -0.5 103,499 - +0.6 103,501 + +1.0 103,501 + +0.2 103,501 + -0.6 103,509 - +1.4 103,509 - -0.3 103,509 - +0.4 103,509 - +0.3 103,529 - -0.7 103,545 + -0.6 103,545 + +1.1 103,545 + +1.0 103,545 + +0.7 103,553 - -0.3 103,632 + HP15_p187g109 0.35 +0.9 103,632 + HP15_p187g109 0.35 -0.6 103,641 - HP15_p187g109 0.38 +1.1 103,652 + HP15_p187g109 0.43 +0.1 103,690 + HP15_p187g109 0.58 -0.1 103,711 - HP15_p187g109 0.67 +0.9 103,769 - +1.1 103,769 - -0.0 103,774 + -0.0 103,812 + +0.4 103,869 + -0.7 103,877 - -0.4 103,879 + -0.1 103,911 - -0.6 103,938 - -0.1 104,079 - HP15_p187g110 0.17 -0.7 104,112 + HP15_p187g110 0.18 +0.6 104,122 + HP15_p187g110 0.19 +0.5 104,122 + HP15_p187g110 0.19 -0.1 104,122 + HP15_p187g110 0.19 -0.6 104,130 - HP15_p187g110 0.19 +1.0 104,238 - HP15_p187g110 0.26 +0.8 104,340 - HP15_p187g110 0.31 +0.0 104,378 + HP15_p187g110 0.34 -0.3 104,386 + HP15_p187g110 0.34 -0.6 104,394 - HP15_p187g110 0.34 +0.7 104,394 - HP15_p187g110 0.34 -0.0 104,394 - HP15_p187g110 0.34 +0.1 104,421 + HP15_p187g110 0.36 +1.2 104,429 - HP15_p187g110 0.36 +0.1 104,429 - HP15_p187g110 0.36 +1.1 104,451 + HP15_p187g110 0.38 +1.4
Or see this region's nucleotide sequence