Experiment: monoculture; Experiment B, time point 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_p187g62 and HP15_p187g63 are separated by 45 nucleotides HP15_p187g63 and HP15_p187g64 are separated by 9 nucleotides HP15_p187g64 and HP15_p187g65 are separated by 3 nucleotides HP15_p187g65 and HP15_p187g66 are separated by 68 nucleotides HP15_p187g66 and HP15_p187g67 overlap by 19 nucleotides
HP15_p187g62: HP15_p187g62 - acetyltransferase, at 56,945 to 57,928
_p187g62
HP15_p187g63: HP15_p187g63 - secreted protein, at 57,974 to 58,090
_p187g63
HP15_p187g64: HP15_p187g64 - hypothetical protein, at 58,100 to 58,204
_p187g64
HP15_p187g65: HP15_p187g65 - protein containing DUF218, at 58,208 to 58,687
_p187g65
HP15_p187g66: HP15_p187g66 - UDP-glucose 4-epimerase, at 58,756 to 59,787
_p187g66
HP15_p187g67: HP15_p187g67 - glycosyl transferase group 1 family protein, at 59,769 to 60,950
_p187g67
Position (kb) 58
59
60 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 57.892 kb on + strand at 57.900 kb on + strand at 57.900 kb on + strand at 57.900 kb on + strand at 57.900 kb on + strand at 57.908 kb on - strand at 57.917 kb on + strand at 57.917 kb on + strand at 57.925 kb on - strand at 57.925 kb on - strand at 57.955 kb on + strand at 57.955 kb on + strand at 57.962 kb on - strand at 57.963 kb on - strand at 58.030 kb on - strand, within HP15_p187g63 at 58.030 kb on - strand, within HP15_p187g63 at 58.052 kb on + strand, within HP15_p187g63 at 58.086 kb on - strand at 58.104 kb on - strand at 58.121 kb on + strand, within HP15_p187g64 at 58.139 kb on + strand, within HP15_p187g64 at 58.139 kb on + strand, within HP15_p187g64 at 58.147 kb on - strand, within HP15_p187g64 at 58.147 kb on - strand, within HP15_p187g64 at 58.147 kb on - strand, within HP15_p187g64 at 58.193 kb on + strand, within HP15_p187g64 at 58.198 kb on + strand at 58.201 kb on - strand at 58.206 kb on - strand at 58.213 kb on - strand at 58.242 kb on - strand at 58.312 kb on - strand, within HP15_p187g65 at 58.339 kb on + strand, within HP15_p187g65 at 58.339 kb on + strand, within HP15_p187g65 at 58.351 kb on + strand, within HP15_p187g65 at 58.359 kb on - strand, within HP15_p187g65 at 58.359 kb on - strand, within HP15_p187g65 at 58.399 kb on + strand, within HP15_p187g65 at 58.399 kb on + strand, within HP15_p187g65 at 58.407 kb on - strand, within HP15_p187g65 at 58.407 kb on - strand, within HP15_p187g65 at 58.409 kb on - strand, within HP15_p187g65 at 58.425 kb on + strand, within HP15_p187g65 at 58.449 kb on + strand, within HP15_p187g65 at 58.455 kb on - strand, within HP15_p187g65 at 58.477 kb on - strand, within HP15_p187g65 at 58.498 kb on - strand, within HP15_p187g65 at 58.529 kb on + strand, within HP15_p187g65 at 58.541 kb on + strand, within HP15_p187g65 at 58.556 kb on - strand, within HP15_p187g65 at 58.562 kb on - strand, within HP15_p187g65 at 58.572 kb on - strand, within HP15_p187g65 at 58.583 kb on + strand, within HP15_p187g65 at 58.583 kb on - strand, within HP15_p187g65 at 58.604 kb on - strand, within HP15_p187g65 at 58.607 kb on + strand, within HP15_p187g65 at 58.616 kb on + strand, within HP15_p187g65 at 58.623 kb on + strand, within HP15_p187g65 at 58.624 kb on - strand, within HP15_p187g65 at 58.624 kb on - strand, within HP15_p187g65 at 58.628 kb on + strand, within HP15_p187g65 at 58.633 kb on + strand, within HP15_p187g65 at 58.641 kb on - strand at 58.813 kb on + strand at 58.853 kb on + strand at 58.888 kb on - strand, within HP15_p187g66 at 58.924 kb on + strand, within HP15_p187g66 at 58.945 kb on + strand, within HP15_p187g66 at 58.960 kb on - strand, within HP15_p187g66 at 58.961 kb on + strand, within HP15_p187g66 at 58.961 kb on + strand, within HP15_p187g66 at 58.969 kb on - strand, within HP15_p187g66 at 58.980 kb on + strand, within HP15_p187g66 at 58.983 kb on + strand, within HP15_p187g66 at 58.986 kb on + strand, within HP15_p187g66 at 58.986 kb on + strand, within HP15_p187g66 at 58.993 kb on - strand, within HP15_p187g66 at 59.021 kb on + strand, within HP15_p187g66 at 59.036 kb on - strand, within HP15_p187g66 at 59.038 kb on + strand, within HP15_p187g66 at 59.038 kb on + strand, within HP15_p187g66 at 59.046 kb on - strand, within HP15_p187g66 at 59.046 kb on - strand, within HP15_p187g66 at 59.051 kb on - strand, within HP15_p187g66 at 59.063 kb on - strand, within HP15_p187g66 at 59.073 kb on - strand, within HP15_p187g66 at 59.073 kb on - strand, within HP15_p187g66 at 59.087 kb on + strand, within HP15_p187g66 at 59.129 kb on - strand, within HP15_p187g66 at 59.172 kb on + strand, within HP15_p187g66 at 59.181 kb on - strand, within HP15_p187g66 at 59.188 kb on + strand, within HP15_p187g66 at 59.190 kb on + strand, within HP15_p187g66 at 59.195 kb on + strand, within HP15_p187g66 at 59.195 kb on + strand, within HP15_p187g66 at 59.212 kb on + strand, within HP15_p187g66 at 59.212 kb on + strand, within HP15_p187g66 at 59.310 kb on - strand, within HP15_p187g66 at 59.338 kb on - strand, within HP15_p187g66 at 59.395 kb on - strand, within HP15_p187g66 at 59.414 kb on + strand, within HP15_p187g66 at 59.414 kb on + strand, within HP15_p187g66 at 59.422 kb on - strand, within HP15_p187g66 at 59.429 kb on - strand, within HP15_p187g66 at 59.437 kb on - strand, within HP15_p187g66 at 59.506 kb on - strand, within HP15_p187g66 at 59.538 kb on + strand, within HP15_p187g66 at 59.553 kb on - strand, within HP15_p187g66 at 59.560 kb on - strand, within HP15_p187g66 at 59.562 kb on - strand, within HP15_p187g66 at 59.596 kb on + strand, within HP15_p187g66 at 59.601 kb on + strand, within HP15_p187g66 at 59.604 kb on - strand, within HP15_p187g66 at 59.604 kb on - strand, within HP15_p187g66 at 59.604 kb on - strand, within HP15_p187g66 at 59.609 kb on - strand, within HP15_p187g66 at 59.615 kb on - strand, within HP15_p187g66 at 59.629 kb on + strand, within HP15_p187g66 at 59.629 kb on + strand, within HP15_p187g66 at 59.629 kb on + strand, within HP15_p187g66 at 59.629 kb on + strand, within HP15_p187g66 at 59.629 kb on + strand, within HP15_p187g66 at 59.629 kb on + strand, within HP15_p187g66 at 59.629 kb on + strand, within HP15_p187g66 at 59.637 kb on - strand, within HP15_p187g66 at 59.637 kb on - strand, within HP15_p187g66 at 59.637 kb on - strand, within HP15_p187g66 at 59.637 kb on - strand, within HP15_p187g66 at 59.637 kb on - strand, within HP15_p187g66 at 59.694 kb on + strand at 59.726 kb on + strand at 59.733 kb on + strand at 59.734 kb on - strand at 59.741 kb on - strand at 59.743 kb on + strand at 59.766 kb on + strand at 59.768 kb on - strand at 59.790 kb on + strand at 59.841 kb on + strand at 59.874 kb on + strand at 59.925 kb on + strand, within HP15_p187g67 at 59.928 kb on - strand, within HP15_p187g67 at 59.955 kb on - strand, within HP15_p187g67 at 60.006 kb on + strand, within HP15_p187g67 at 60.015 kb on - strand, within HP15_p187g67 at 60.020 kb on - strand, within HP15_p187g67 at 60.027 kb on + strand, within HP15_p187g67 at 60.105 kb on + strand, within HP15_p187g67 at 60.105 kb on + strand, within HP15_p187g67 at 60.113 kb on - strand, within HP15_p187g67 at 60.113 kb on - strand, within HP15_p187g67 at 60.153 kb on + strand, within HP15_p187g67 at 60.161 kb on - strand, within HP15_p187g67 at 60.161 kb on - strand, within HP15_p187g67 at 60.207 kb on + strand, within HP15_p187g67 at 60.207 kb on + strand, within HP15_p187g67 at 60.262 kb on + strand, within HP15_p187g67 at 60.262 kb on + strand, within HP15_p187g67 at 60.269 kb on - strand, within HP15_p187g67 at 60.293 kb on - strand, within HP15_p187g67 at 60.302 kb on + strand, within HP15_p187g67 at 60.302 kb on + strand, within HP15_p187g67 at 60.302 kb on + strand, within HP15_p187g67 at 60.310 kb on - strand, within HP15_p187g67 at 60.311 kb on - strand, within HP15_p187g67 at 60.333 kb on + strand, within HP15_p187g67 at 60.341 kb on - strand, within HP15_p187g67 at 60.341 kb on - strand, within HP15_p187g67 at 60.369 kb on + strand, within HP15_p187g67 at 60.401 kb on + strand, within HP15_p187g67 at 60.424 kb on - strand, within HP15_p187g67 at 60.425 kb on + strand, within HP15_p187g67 at 60.425 kb on - strand, within HP15_p187g67 at 60.449 kb on + strand, within HP15_p187g67 at 60.457 kb on - strand, within HP15_p187g67 at 60.457 kb on - strand, within HP15_p187g67 at 60.457 kb on - strand, within HP15_p187g67 at 60.471 kb on - strand, within HP15_p187g67 at 60.471 kb on - strand, within HP15_p187g67 at 60.492 kb on - strand, within HP15_p187g67 at 60.540 kb on - strand, within HP15_p187g67 at 60.550 kb on - strand, within HP15_p187g67 at 60.566 kb on - strand, within HP15_p187g67 at 60.568 kb on + strand, within HP15_p187g67 at 60.620 kb on + strand, within HP15_p187g67 at 60.635 kb on + strand, within HP15_p187g67 at 60.635 kb on + strand, within HP15_p187g67 at 60.655 kb on + strand, within HP15_p187g67 at 60.685 kb on + strand, within HP15_p187g67 at 60.715 kb on - strand, within HP15_p187g67 at 60.715 kb on - strand, within HP15_p187g67 at 60.723 kb on + strand, within HP15_p187g67 at 60.729 kb on - strand, within HP15_p187g67 at 60.746 kb on + strand, within HP15_p187g67 at 60.780 kb on + strand, within HP15_p187g67 at 60.780 kb on + strand, within HP15_p187g67 at 60.780 kb on + strand, within HP15_p187g67 at 60.780 kb on + strand, within HP15_p187g67 at 60.780 kb on + strand, within HP15_p187g67 at 60.780 kb on + strand, within HP15_p187g67
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 4 remove 57,892 + -0.5 57,900 + -0.3 57,900 + +0.7 57,900 + -0.6 57,900 + +0.5 57,908 - -0.5 57,917 + +1.0 57,917 + +0.1 57,925 - -0.5 57,925 - +0.8 57,955 + -0.4 57,955 + -1.0 57,962 - -3.2 57,963 - -0.4 58,030 - HP15_p187g63 0.48 -0.6 58,030 - HP15_p187g63 0.48 -0.2 58,052 + HP15_p187g63 0.67 +1.3 58,086 - -0.7 58,104 - +0.7 58,121 + HP15_p187g64 0.20 -0.2 58,139 + HP15_p187g64 0.37 -0.2 58,139 + HP15_p187g64 0.37 -1.0 58,147 - HP15_p187g64 0.45 +1.1 58,147 - HP15_p187g64 0.45 +0.6 58,147 - HP15_p187g64 0.45 -0.0 58,193 + HP15_p187g64 0.89 -0.8 58,198 + +1.3 58,201 - +0.7 58,206 - +0.1 58,213 - -0.2 58,242 - +0.1 58,312 - HP15_p187g65 0.22 +0.4 58,339 + HP15_p187g65 0.27 +0.5 58,339 + HP15_p187g65 0.27 +1.0 58,351 + HP15_p187g65 0.30 +1.0 58,359 - HP15_p187g65 0.31 +1.2 58,359 - HP15_p187g65 0.31 -0.7 58,399 + HP15_p187g65 0.40 -0.2 58,399 + HP15_p187g65 0.40 -0.6 58,407 - HP15_p187g65 0.41 +1.2 58,407 - HP15_p187g65 0.41 -0.4 58,409 - HP15_p187g65 0.42 -0.7 58,425 + HP15_p187g65 0.45 +1.4 58,449 + HP15_p187g65 0.50 +0.2 58,455 - HP15_p187g65 0.51 -0.2 58,477 - HP15_p187g65 0.56 +0.5 58,498 - HP15_p187g65 0.60 -0.4 58,529 + HP15_p187g65 0.67 +1.1 58,541 + HP15_p187g65 0.69 -0.3 58,556 - HP15_p187g65 0.72 -0.9 58,562 - HP15_p187g65 0.74 -1.2 58,572 - HP15_p187g65 0.76 -0.0 58,583 + HP15_p187g65 0.78 -0.4 58,583 - HP15_p187g65 0.78 -0.1 58,604 - HP15_p187g65 0.82 +0.7 58,607 + HP15_p187g65 0.83 -0.1 58,616 + HP15_p187g65 0.85 -0.4 58,623 + HP15_p187g65 0.86 -0.4 58,624 - HP15_p187g65 0.87 -0.3 58,624 - HP15_p187g65 0.87 -0.6 58,628 + HP15_p187g65 0.88 -1.9 58,633 + HP15_p187g65 0.89 -1.7 58,641 - -0.5 58,813 + +0.2 58,853 + +0.8 58,888 - HP15_p187g66 0.13 -0.6 58,924 + HP15_p187g66 0.16 -0.7 58,945 + HP15_p187g66 0.18 -0.2 58,960 - HP15_p187g66 0.20 -0.8 58,961 + HP15_p187g66 0.20 -0.4 58,961 + HP15_p187g66 0.20 +0.7 58,969 - HP15_p187g66 0.21 +0.6 58,980 + HP15_p187g66 0.22 -0.6 58,983 + HP15_p187g66 0.22 -0.4 58,986 + HP15_p187g66 0.22 -0.5 58,986 + HP15_p187g66 0.22 -0.5 58,993 - HP15_p187g66 0.23 +0.6 59,021 + HP15_p187g66 0.26 -0.4 59,036 - HP15_p187g66 0.27 +1.3 59,038 + HP15_p187g66 0.27 -0.5 59,038 + HP15_p187g66 0.27 +0.7 59,046 - HP15_p187g66 0.28 -0.3 59,046 - HP15_p187g66 0.28 +1.1 59,051 - HP15_p187g66 0.29 +0.4 59,063 - HP15_p187g66 0.30 +0.5 59,073 - HP15_p187g66 0.31 -0.8 59,073 - HP15_p187g66 0.31 -0.9 59,087 + HP15_p187g66 0.32 +0.9 59,129 - HP15_p187g66 0.36 +1.4 59,172 + HP15_p187g66 0.40 +1.0 59,181 - HP15_p187g66 0.41 -1.2 59,188 + HP15_p187g66 0.42 +0.2 59,190 + HP15_p187g66 0.42 -1.1 59,195 + HP15_p187g66 0.43 -0.2 59,195 + HP15_p187g66 0.43 +0.1 59,212 + HP15_p187g66 0.44 +0.7 59,212 + HP15_p187g66 0.44 -1.8 59,310 - HP15_p187g66 0.54 +0.7 59,338 - HP15_p187g66 0.56 +0.1 59,395 - HP15_p187g66 0.62 -2.5 59,414 + HP15_p187g66 0.64 +0.1 59,414 + HP15_p187g66 0.64 -0.6 59,422 - HP15_p187g66 0.65 -2.1 59,429 - HP15_p187g66 0.65 -0.0 59,437 - HP15_p187g66 0.66 -0.6 59,506 - HP15_p187g66 0.73 -0.4 59,538 + HP15_p187g66 0.76 +1.0 59,553 - HP15_p187g66 0.77 -0.9 59,560 - HP15_p187g66 0.78 -0.6 59,562 - HP15_p187g66 0.78 -0.6 59,596 + HP15_p187g66 0.81 +0.5 59,601 + HP15_p187g66 0.82 +0.4 59,604 - HP15_p187g66 0.82 +0.9 59,604 - HP15_p187g66 0.82 -0.8 59,604 - HP15_p187g66 0.82 -0.4 59,609 - HP15_p187g66 0.83 -0.3 59,615 - HP15_p187g66 0.83 -2.3 59,629 + HP15_p187g66 0.85 -0.5 59,629 + HP15_p187g66 0.85 -0.2 59,629 + HP15_p187g66 0.85 -0.5 59,629 + HP15_p187g66 0.85 -1.9 59,629 + HP15_p187g66 0.85 -0.2 59,629 + HP15_p187g66 0.85 -0.5 59,629 + HP15_p187g66 0.85 -1.5 59,637 - HP15_p187g66 0.85 -0.6 59,637 - HP15_p187g66 0.85 +0.1 59,637 - HP15_p187g66 0.85 +1.1 59,637 - HP15_p187g66 0.85 -0.9 59,637 - HP15_p187g66 0.85 +1.3 59,694 + +0.3 59,726 + +0.2 59,733 + +0.4 59,734 - +0.9 59,741 - +1.3 59,743 + +1.5 59,766 + -0.0 59,768 - -0.6 59,790 + -0.1 59,841 + -1.9 59,874 + +0.4 59,925 + HP15_p187g67 0.13 -2.1 59,928 - HP15_p187g67 0.13 -1.2 59,955 - HP15_p187g67 0.16 -0.1 60,006 + HP15_p187g67 0.20 -1.2 60,015 - HP15_p187g67 0.21 +0.2 60,020 - HP15_p187g67 0.21 +0.8 60,027 + HP15_p187g67 0.22 +1.4 60,105 + HP15_p187g67 0.28 -1.1 60,105 + HP15_p187g67 0.28 -1.0 60,113 - HP15_p187g67 0.29 -2.2 60,113 - HP15_p187g67 0.29 -1.1 60,153 + HP15_p187g67 0.32 -3.4 60,161 - HP15_p187g67 0.33 +0.4 60,161 - HP15_p187g67 0.33 -1.2 60,207 + HP15_p187g67 0.37 -0.1 60,207 + HP15_p187g67 0.37 +1.0 60,262 + HP15_p187g67 0.42 -2.5 60,262 + HP15_p187g67 0.42 -1.1 60,269 - HP15_p187g67 0.42 -0.9 60,293 - HP15_p187g67 0.44 -1.3 60,302 + HP15_p187g67 0.45 +1.5 60,302 + HP15_p187g67 0.45 +0.7 60,302 + HP15_p187g67 0.45 -0.7 60,310 - HP15_p187g67 0.46 -1.2 60,311 - HP15_p187g67 0.46 -1.5 60,333 + HP15_p187g67 0.48 -1.1 60,341 - HP15_p187g67 0.48 -1.3 60,341 - HP15_p187g67 0.48 +1.7 60,369 + HP15_p187g67 0.51 -1.5 60,401 + HP15_p187g67 0.53 -1.3 60,424 - HP15_p187g67 0.55 +1.2 60,425 + HP15_p187g67 0.55 -1.0 60,425 - HP15_p187g67 0.55 -1.6 60,449 + HP15_p187g67 0.58 -0.4 60,457 - HP15_p187g67 0.58 -2.2 60,457 - HP15_p187g67 0.58 +0.9 60,457 - HP15_p187g67 0.58 -0.7 60,471 - HP15_p187g67 0.59 +1.2 60,471 - HP15_p187g67 0.59 -1.3 60,492 - HP15_p187g67 0.61 -1.5 60,540 - HP15_p187g67 0.65 -2.2 60,550 - HP15_p187g67 0.66 -0.2 60,566 - HP15_p187g67 0.67 -1.3 60,568 + HP15_p187g67 0.68 -1.3 60,620 + HP15_p187g67 0.72 -0.9 60,635 + HP15_p187g67 0.73 -1.9 60,635 + HP15_p187g67 0.73 +0.3 60,655 + HP15_p187g67 0.75 -0.0 60,685 + HP15_p187g67 0.77 -0.4 60,715 - HP15_p187g67 0.80 +0.9 60,715 - HP15_p187g67 0.80 -1.2 60,723 + HP15_p187g67 0.81 +1.6 60,729 - HP15_p187g67 0.81 +0.8 60,746 + HP15_p187g67 0.83 -1.1 60,780 + HP15_p187g67 0.86 -2.1 60,780 + HP15_p187g67 0.86 -0.8 60,780 + HP15_p187g67 0.86 +1.4 60,780 + HP15_p187g67 0.86 -0.7 60,780 + HP15_p187g67 0.86 +1.1 60,780 + HP15_p187g67 0.86 +0.6
Or see this region's nucleotide sequence