Experiment: monoculture; Experiment B, time point 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_419 and HP15_420 are separated by 572 nucleotides HP15_420 and HP15_421 are separated by 26 nucleotides HP15_421 and HP15_422 overlap by 1 nucleotides
HP15_419: HP15_419 - pilin, at 415,019 to 415,537
_419
HP15_420: HP15_420 - type II secretory pathway, pseudopilin PulG, at 416,110 to 416,577
_420
HP15_421: HP15_421 - MSHA pilin protein MshD, at 416,604 to 417,062
_421
HP15_422: HP15_422 - protein containing prepilin-type cleavage/methylation, N-terminal domains, at 417,062 to 417,847
_422
Position (kb) 416
417 Strain fitness (log2 ratio) -2
-1
0
1
2 at 415.132 kb on + strand, within HP15_419 at 415.166 kb on - strand, within HP15_419 at 415.201 kb on + strand, within HP15_419 at 415.209 kb on - strand, within HP15_419 at 415.209 kb on - strand, within HP15_419 at 415.352 kb on - strand, within HP15_419 at 415.475 kb on + strand, within HP15_419 at 415.512 kb on + strand at 415.520 kb on - strand at 415.635 kb on - strand at 415.731 kb on + strand at 415.887 kb on + strand at 415.889 kb on + strand at 415.927 kb on - strand at 415.960 kb on - strand at 416.075 kb on + strand at 416.227 kb on + strand, within HP15_420 at 416.399 kb on - strand, within HP15_420 at 416.511 kb on + strand, within HP15_420 at 416.591 kb on - strand at 416.708 kb on - strand, within HP15_421 at 416.729 kb on + strand, within HP15_421 at 416.729 kb on + strand, within HP15_421 at 416.912 kb on - strand, within HP15_421 at 416.940 kb on + strand, within HP15_421 at 416.940 kb on + strand, within HP15_421 at 417.078 kb on + strand at 417.168 kb on + strand, within HP15_422 at 417.233 kb on + strand, within HP15_422 at 417.242 kb on + strand, within HP15_422 at 417.242 kb on + strand, within HP15_422 at 417.299 kb on - strand, within HP15_422 at 417.299 kb on - strand, within HP15_422 at 417.327 kb on + strand, within HP15_422 at 417.421 kb on - strand, within HP15_422 at 417.434 kb on - strand, within HP15_422 at 417.489 kb on - strand, within HP15_422
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 4 remove 415,132 + HP15_419 0.22 +0.8 415,166 - HP15_419 0.28 +0.5 415,201 + HP15_419 0.35 -0.3 415,209 - HP15_419 0.37 -0.3 415,209 - HP15_419 0.37 +0.9 415,352 - HP15_419 0.64 -0.6 415,475 + HP15_419 0.88 -0.3 415,512 + +0.0 415,520 - -0.5 415,635 - -0.6 415,731 + -0.3 415,887 + +1.3 415,889 + -0.8 415,927 - -0.3 415,960 - -1.1 416,075 + -0.4 416,227 + HP15_420 0.25 -1.1 416,399 - HP15_420 0.62 -0.4 416,511 + HP15_420 0.86 -1.5 416,591 - -0.5 416,708 - HP15_421 0.23 -0.3 416,729 + HP15_421 0.27 +1.1 416,729 + HP15_421 0.27 +1.7 416,912 - HP15_421 0.67 -1.4 416,940 + HP15_421 0.73 +1.2 416,940 + HP15_421 0.73 +1.8 417,078 + -0.5 417,168 + HP15_422 0.13 +0.6 417,233 + HP15_422 0.22 +1.5 417,242 + HP15_422 0.23 -0.9 417,242 + HP15_422 0.23 -0.6 417,299 - HP15_422 0.30 +1.0 417,299 - HP15_422 0.30 -2.4 417,327 + HP15_422 0.34 -0.5 417,421 - HP15_422 0.46 +0.7 417,434 - HP15_422 0.47 +0.9 417,489 - HP15_422 0.54 +1.3
Or see this region's nucleotide sequence