Experiment: monoculture; Experiment B, time point 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_265 and HP15_266 are separated by 21 nucleotides HP15_266 and HP15_267 are separated by 230 nucleotides
HP15_265: HP15_265 - sodium/hydrogen exchanger family protein, at 254,735 to 256,612
_265
HP15_266: HP15_266 - UBA/THIF-type NAD/FAD binding protein, at 256,634 to 257,467
_266
HP15_267: HP15_267 - acyl-CoA dehydrogenase family protein, at 257,698 to 259,473
_267
Position (kb) 256
257
258 Strain fitness (log2 ratio) -1
0
1 at 255.760 kb on + strand, within HP15_265 at 255.779 kb on + strand, within HP15_265 at 255.880 kb on + strand, within HP15_265 at 255.925 kb on + strand, within HP15_265 at 256.076 kb on + strand, within HP15_265 at 256.081 kb on + strand, within HP15_265 at 256.182 kb on - strand, within HP15_265 at 256.194 kb on + strand, within HP15_265 at 256.250 kb on + strand, within HP15_265 at 256.263 kb on + strand, within HP15_265 at 256.271 kb on - strand, within HP15_265 at 256.271 kb on - strand, within HP15_265 at 256.313 kb on + strand, within HP15_265 at 256.326 kb on - strand, within HP15_265 at 256.333 kb on + strand, within HP15_265 at 256.333 kb on + strand, within HP15_265 at 256.340 kb on - strand, within HP15_265 at 256.392 kb on - strand, within HP15_265 at 256.475 kb on + strand at 256.483 kb on - strand at 256.527 kb on + strand at 256.551 kb on - strand at 256.589 kb on + strand at 256.597 kb on - strand at 256.717 kb on + strand at 256.810 kb on + strand, within HP15_266 at 256.918 kb on - strand, within HP15_266 at 256.930 kb on + strand, within HP15_266 at 256.936 kb on - strand, within HP15_266 at 256.943 kb on + strand, within HP15_266 at 257.016 kb on - strand, within HP15_266 at 257.066 kb on + strand, within HP15_266 at 257.074 kb on - strand, within HP15_266 at 257.137 kb on - strand, within HP15_266 at 257.332 kb on + strand, within HP15_266 at 257.337 kb on + strand, within HP15_266 at 257.356 kb on - strand, within HP15_266 at 257.443 kb on - strand at 257.448 kb on - strand at 257.586 kb on - strand at 257.677 kb on - strand at 257.705 kb on + strand at 257.732 kb on + strand at 257.836 kb on + strand at 257.888 kb on + strand, within HP15_267 at 257.891 kb on - strand, within HP15_267 at 257.891 kb on - strand, within HP15_267 at 257.896 kb on - strand, within HP15_267 at 257.953 kb on - strand, within HP15_267 at 258.030 kb on - strand, within HP15_267 at 258.037 kb on + strand, within HP15_267 at 258.077 kb on + strand, within HP15_267 at 258.107 kb on + strand, within HP15_267 at 258.236 kb on + strand, within HP15_267 at 258.273 kb on - strand, within HP15_267 at 258.369 kb on + strand, within HP15_267 at 258.401 kb on - strand, within HP15_267 at 258.412 kb on - strand, within HP15_267 at 258.423 kb on - strand, within HP15_267
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 4 remove 255,760 + HP15_265 0.55 -0.7 255,779 + HP15_265 0.56 +1.5 255,880 + HP15_265 0.61 +0.2 255,925 + HP15_265 0.63 -0.5 256,076 + HP15_265 0.71 -0.1 256,081 + HP15_265 0.72 -0.8 256,182 - HP15_265 0.77 +0.3 256,194 + HP15_265 0.78 -1.6 256,250 + HP15_265 0.81 +0.4 256,263 + HP15_265 0.81 +0.8 256,271 - HP15_265 0.82 -0.6 256,271 - HP15_265 0.82 -0.0 256,313 + HP15_265 0.84 -0.9 256,326 - HP15_265 0.85 -1.1 256,333 + HP15_265 0.85 -0.7 256,333 + HP15_265 0.85 +1.1 256,340 - HP15_265 0.85 -0.3 256,392 - HP15_265 0.88 +0.4 256,475 + +1.4 256,483 - +1.0 256,527 + -0.1 256,551 - -0.3 256,589 + -0.6 256,597 - -0.5 256,717 + -0.1 256,810 + HP15_266 0.21 +0.4 256,918 - HP15_266 0.34 +0.6 256,930 + HP15_266 0.35 -0.1 256,936 - HP15_266 0.36 +0.2 256,943 + HP15_266 0.37 +0.4 257,016 - HP15_266 0.46 -0.3 257,066 + HP15_266 0.52 -0.6 257,074 - HP15_266 0.53 -0.7 257,137 - HP15_266 0.60 -0.9 257,332 + HP15_266 0.84 -1.6 257,337 + HP15_266 0.84 -0.6 257,356 - HP15_266 0.87 +0.5 257,443 - -0.4 257,448 - -0.4 257,586 - +1.4 257,677 - +0.9 257,705 + +0.6 257,732 + +0.1 257,836 + -1.2 257,888 + HP15_267 0.11 -1.5 257,891 - HP15_267 0.11 -0.0 257,891 - HP15_267 0.11 -0.9 257,896 - HP15_267 0.11 -0.4 257,953 - HP15_267 0.14 -1.1 258,030 - HP15_267 0.19 -0.2 258,037 + HP15_267 0.19 -0.3 258,077 + HP15_267 0.21 -0.3 258,107 + HP15_267 0.23 -1.7 258,236 + HP15_267 0.30 +0.2 258,273 - HP15_267 0.32 -0.5 258,369 + HP15_267 0.38 +0.4 258,401 - HP15_267 0.40 +0.2 258,412 - HP15_267 0.40 +0.4 258,423 - HP15_267 0.41 -0.2
Or see this region's nucleotide sequence