Experiment: monoculture; Experiment B, time point 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2480 and HP15_2481 are separated by 22 nucleotides HP15_2481 and HP15_2482 are separated by 51 nucleotides HP15_2482 and HP15_2483 are separated by 22 nucleotides HP15_2483 and HP15_2484 overlap by 4 nucleotides
HP15_2480: HP15_2480 - conserved hypothetical protein, at 2,622,068 to 2,622,736
_2480
HP15_2481: HP15_2481 - protein of unknown function domain protein, at 2,622,759 to 2,623,004
_2481
HP15_2482: HP15_2482 - dethiobiotin synthetase, at 2,623,056 to 2,623,748
_2482
HP15_2483: HP15_2483 - protein containing methyltransferase type 11 domain, at 2,623,771 to 2,624,592
_2483
HP15_2484: HP15_2484 - biotin biosynthesis protein BioH, at 2,624,589 to 2,625,314
_2484
Position (kb)
2623
2624 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2622.079 kb on - strand at 2622.079 kb on - strand at 2622.126 kb on - strand at 2622.134 kb on + strand at 2622.196 kb on + strand, within HP15_2480 at 2622.196 kb on + strand, within HP15_2480 at 2622.204 kb on - strand, within HP15_2480 at 2622.334 kb on - strand, within HP15_2480 at 2622.343 kb on + strand, within HP15_2480 at 2622.466 kb on - strand, within HP15_2480 at 2622.506 kb on + strand, within HP15_2480 at 2622.521 kb on + strand, within HP15_2480 at 2622.706 kb on + strand at 2623.052 kb on - strand at 2623.141 kb on - strand, within HP15_2482 at 2623.191 kb on + strand, within HP15_2482 at 2623.272 kb on - strand, within HP15_2482 at 2623.272 kb on - strand, within HP15_2482 at 2623.393 kb on + strand, within HP15_2482 at 2623.459 kb on + strand, within HP15_2482 at 2623.467 kb on - strand, within HP15_2482 at 2623.475 kb on - strand, within HP15_2482 at 2623.563 kb on - strand, within HP15_2482 at 2623.571 kb on + strand, within HP15_2482 at 2623.579 kb on - strand, within HP15_2482 at 2623.579 kb on - strand, within HP15_2482 at 2623.662 kb on - strand, within HP15_2482 at 2623.776 kb on - strand at 2623.784 kb on - strand at 2623.807 kb on - strand at 2623.807 kb on - strand at 2623.896 kb on - strand, within HP15_2483 at 2623.911 kb on - strand, within HP15_2483 at 2624.110 kb on + strand, within HP15_2483 at 2624.110 kb on + strand, within HP15_2483 at 2624.110 kb on + strand, within HP15_2483 at 2624.185 kb on - strand, within HP15_2483 at 2624.276 kb on - strand, within HP15_2483 at 2624.405 kb on - strand, within HP15_2483 at 2624.425 kb on + strand, within HP15_2483 at 2624.484 kb on + strand, within HP15_2483 at 2624.530 kb on + strand at 2624.532 kb on - strand at 2624.587 kb on + strand at 2624.666 kb on + strand, within HP15_2484
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 4 remove 2,622,079 - -0.6 2,622,079 - +0.0 2,622,126 - -0.7 2,622,134 + -0.4 2,622,196 + HP15_2480 0.19 -0.3 2,622,196 + HP15_2480 0.19 +1.1 2,622,204 - HP15_2480 0.20 +0.9 2,622,334 - HP15_2480 0.40 +1.2 2,622,343 + HP15_2480 0.41 -0.4 2,622,466 - HP15_2480 0.59 +0.9 2,622,506 + HP15_2480 0.65 +0.9 2,622,521 + HP15_2480 0.68 +0.3 2,622,706 + +1.0 2,623,052 - +0.0 2,623,141 - HP15_2482 0.12 -1.1 2,623,191 + HP15_2482 0.19 +0.3 2,623,272 - HP15_2482 0.31 -0.8 2,623,272 - HP15_2482 0.31 -0.5 2,623,393 + HP15_2482 0.49 -0.9 2,623,459 + HP15_2482 0.58 -0.8 2,623,467 - HP15_2482 0.59 -0.1 2,623,475 - HP15_2482 0.60 +0.7 2,623,563 - HP15_2482 0.73 -2.1 2,623,571 + HP15_2482 0.74 -0.0 2,623,579 - HP15_2482 0.75 +0.2 2,623,579 - HP15_2482 0.75 -0.8 2,623,662 - HP15_2482 0.87 +0.4 2,623,776 - +0.1 2,623,784 - -0.9 2,623,807 - -0.9 2,623,807 - +0.8 2,623,896 - HP15_2483 0.15 +1.2 2,623,911 - HP15_2483 0.17 +0.8 2,624,110 + HP15_2483 0.41 -0.2 2,624,110 + HP15_2483 0.41 -0.2 2,624,110 + HP15_2483 0.41 -0.4 2,624,185 - HP15_2483 0.50 -0.7 2,624,276 - HP15_2483 0.61 +1.1 2,624,405 - HP15_2483 0.77 +1.8 2,624,425 + HP15_2483 0.80 -0.1 2,624,484 + HP15_2483 0.87 +0.5 2,624,530 + -0.7 2,624,532 - +0.1 2,624,587 + -0.2 2,624,666 + HP15_2484 0.11 +0.2
Or see this region's nucleotide sequence