Experiment: monoculture; Experiment B, time point 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2205 and HP15_2206 are separated by 348 nucleotides HP15_2206 and HP15_2207 are separated by 100 nucleotides HP15_2207 and HP15_2208 overlap by 4 nucleotides
HP15_2205: HP15_2205 - sodium/solute symporter, at 2,323,918 to 2,325,363
_2205
HP15_2206: HP15_2206 - AraC-type DNA-binding domain-containing protein, at 2,325,712 to 2,326,491
_2206
HP15_2207: HP15_2207 - thymidylate kinase, at 2,326,592 to 2,327,233
_2207
HP15_2208: HP15_2208 - aminodeoxychorismate lyase, at 2,327,230 to 2,328,204
_2208
Position (kb)
2325
2326
2327 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2324.750 kb on - strand, within HP15_2205 at 2324.751 kb on - strand, within HP15_2205 at 2324.935 kb on - strand, within HP15_2205 at 2324.980 kb on + strand, within HP15_2205 at 2325.045 kb on + strand, within HP15_2205 at 2325.168 kb on + strand, within HP15_2205 at 2325.176 kb on - strand, within HP15_2205 at 2325.220 kb on - strand at 2325.305 kb on + strand at 2325.312 kb on + strand at 2325.313 kb on - strand at 2325.405 kb on + strand at 2325.454 kb on + strand at 2325.454 kb on + strand at 2325.459 kb on + strand at 2325.613 kb on - strand at 2325.781 kb on - strand at 2325.781 kb on - strand at 2325.864 kb on + strand, within HP15_2206 at 2325.871 kb on - strand, within HP15_2206 at 2325.873 kb on - strand, within HP15_2206 at 2325.897 kb on + strand, within HP15_2206 at 2325.904 kb on - strand, within HP15_2206 at 2326.020 kb on + strand, within HP15_2206 at 2326.028 kb on - strand, within HP15_2206 at 2326.041 kb on + strand, within HP15_2206 at 2326.041 kb on + strand, within HP15_2206 at 2326.041 kb on + strand, within HP15_2206 at 2326.049 kb on - strand, within HP15_2206 at 2326.082 kb on + strand, within HP15_2206 at 2326.096 kb on + strand, within HP15_2206 at 2326.127 kb on - strand, within HP15_2206 at 2326.245 kb on + strand, within HP15_2206 at 2326.283 kb on - strand, within HP15_2206 at 2326.353 kb on + strand, within HP15_2206 at 2326.372 kb on + strand, within HP15_2206 at 2326.393 kb on + strand, within HP15_2206 at 2326.465 kb on - strand at 2327.395 kb on - strand, within HP15_2208
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 4 remove 2,324,750 - HP15_2205 0.58 +1.7 2,324,751 - HP15_2205 0.58 -0.3 2,324,935 - HP15_2205 0.70 +0.3 2,324,980 + HP15_2205 0.73 -0.2 2,325,045 + HP15_2205 0.78 +0.2 2,325,168 + HP15_2205 0.86 +0.9 2,325,176 - HP15_2205 0.87 +0.6 2,325,220 - +0.4 2,325,305 + +0.2 2,325,312 + -2.6 2,325,313 - -0.4 2,325,405 + -0.4 2,325,454 + +2.0 2,325,454 + -1.4 2,325,459 + -1.1 2,325,613 - -1.5 2,325,781 - +0.5 2,325,781 - +0.0 2,325,864 + HP15_2206 0.19 +0.4 2,325,871 - HP15_2206 0.20 -1.4 2,325,873 - HP15_2206 0.21 -0.3 2,325,897 + HP15_2206 0.24 +1.4 2,325,904 - HP15_2206 0.25 -1.2 2,326,020 + HP15_2206 0.39 +1.7 2,326,028 - HP15_2206 0.41 -1.5 2,326,041 + HP15_2206 0.42 -0.4 2,326,041 + HP15_2206 0.42 +0.4 2,326,041 + HP15_2206 0.42 +0.2 2,326,049 - HP15_2206 0.43 +0.0 2,326,082 + HP15_2206 0.47 -0.1 2,326,096 + HP15_2206 0.49 +1.7 2,326,127 - HP15_2206 0.53 +1.3 2,326,245 + HP15_2206 0.68 +1.1 2,326,283 - HP15_2206 0.73 +1.3 2,326,353 + HP15_2206 0.82 +1.1 2,326,372 + HP15_2206 0.85 +0.4 2,326,393 + HP15_2206 0.87 -0.5 2,326,465 - -0.0 2,327,395 - HP15_2208 0.17 -0.1
Or see this region's nucleotide sequence