Experiment: monoculture; Experiment B, time point 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1609 and HP15_1610 are separated by 3 nucleotides HP15_1610 and HP15_1611 are separated by 56 nucleotides HP15_1611 and HP15_1612 are separated by 26 nucleotides
HP15_1609: HP15_1609 - general secretion pathway protein L, at 1,704,817 to 1,706,121
_1609
HP15_1610: HP15_1610 - general secretion pathway protein M, at 1,706,125 to 1,706,655
_1610
HP15_1611: HP15_1611 - GCN5-related N-acetyltransferase, at 1,706,712 to 1,707,383
_1611
HP15_1612: HP15_1612 - protein containing FAD-dependent pyridine nucleotide-disulfide oxidoreductase / Pyridine nucleotide-disulfide oxidoreductase, dimerization, at 1,707,410 to 1,708,771
_1612
Position (kb)
1706
1707
1708 Strain fitness (log2 ratio)
-2
-1
0
1 at 1706.018 kb on - strand at 1706.215 kb on + strand, within HP15_1610 at 1706.531 kb on + strand, within HP15_1610 at 1706.596 kb on + strand, within HP15_1610 at 1706.604 kb on - strand at 1706.799 kb on - strand, within HP15_1611 at 1707.033 kb on + strand, within HP15_1611 at 1707.053 kb on - strand, within HP15_1611 at 1707.053 kb on - strand, within HP15_1611 at 1707.486 kb on - strand at 1707.515 kb on + strand at 1707.651 kb on + strand, within HP15_1612 at 1707.944 kb on + strand, within HP15_1612 at 1707.952 kb on - strand, within HP15_1612 at 1707.981 kb on + strand, within HP15_1612 at 1708.148 kb on + strand, within HP15_1612 at 1708.173 kb on + strand, within HP15_1612 at 1708.229 kb on - strand, within HP15_1612 at 1708.229 kb on - strand, within HP15_1612 at 1708.285 kb on + strand, within HP15_1612 at 1708.321 kb on - strand, within HP15_1612 at 1708.356 kb on + strand, within HP15_1612 at 1708.366 kb on + strand, within HP15_1612 at 1708.381 kb on - strand, within HP15_1612
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 4 remove 1,706,018 - -0.1 1,706,215 + HP15_1610 0.17 -1.8 1,706,531 + HP15_1610 0.76 -1.4 1,706,596 + HP15_1610 0.89 -1.7 1,706,604 - -0.5 1,706,799 - HP15_1611 0.13 +0.5 1,707,033 + HP15_1611 0.48 -0.1 1,707,053 - HP15_1611 0.51 -0.3 1,707,053 - HP15_1611 0.51 -0.5 1,707,486 - -0.3 1,707,515 + +0.1 1,707,651 + HP15_1612 0.18 +0.7 1,707,944 + HP15_1612 0.39 +0.8 1,707,952 - HP15_1612 0.40 +0.3 1,707,981 + HP15_1612 0.42 +0.3 1,708,148 + HP15_1612 0.54 +0.8 1,708,173 + HP15_1612 0.56 -0.2 1,708,229 - HP15_1612 0.60 -0.1 1,708,229 - HP15_1612 0.60 +0.0 1,708,285 + HP15_1612 0.64 -0.5 1,708,321 - HP15_1612 0.67 -0.3 1,708,356 + HP15_1612 0.69 +0.3 1,708,366 + HP15_1612 0.70 -0.6 1,708,381 - HP15_1612 0.71 +0.4
Or see this region's nucleotide sequence