Experiment: monoculture; Experiment B, time point 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1430 and HP15_1431 are separated by 624 nucleotides HP15_1431 and HP15_1432 are separated by 65 nucleotides HP15_1432 and HP15_1433 are separated by 71 nucleotides HP15_1433 and HP15_1434 are separated by 1 nucleotides
HP15_1430: HP15_1430 - glutathione S-transferase family protein, at 1,510,454 to 1,511,050
_1430
HP15_1431: HP15_1431 - zinc finger, C4 DksA/TraR-type, at 1,511,675 to 1,511,974
_1431
HP15_1432: HP15_1432 - conserved hypothetical protein, membrane, at 1,512,040 to 1,512,318
_1432
HP15_1433: HP15_1433 - conserved hypothetical protein, secreted, at 1,512,390 to 1,512,887
_1433
HP15_1434: HP15_1434 - conserved hypothetical protein, at 1,512,889 to 1,513,209
_1434
Position (kb)
1511
1512 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1510.787 kb on + strand, within HP15_1430 at 1510.787 kb on + strand, within HP15_1430 at 1510.816 kb on + strand, within HP15_1430 at 1510.816 kb on + strand, within HP15_1430 at 1510.816 kb on + strand, within HP15_1430 at 1510.816 kb on + strand, within HP15_1430 at 1510.824 kb on - strand, within HP15_1430 at 1510.856 kb on - strand, within HP15_1430 at 1510.872 kb on + strand, within HP15_1430 at 1511.029 kb on + strand at 1511.054 kb on + strand at 1511.145 kb on + strand at 1511.153 kb on - strand at 1511.257 kb on - strand at 1511.480 kb on - strand at 1511.669 kb on - strand at 1511.937 kb on + strand, within HP15_1431 at 1511.947 kb on + strand at 1511.971 kb on - strand at 1512.020 kb on + strand at 1512.046 kb on - strand at 1512.106 kb on + strand, within HP15_1432 at 1512.114 kb on - strand, within HP15_1432 at 1512.114 kb on - strand, within HP15_1432 at 1512.348 kb on - strand at 1512.513 kb on - strand, within HP15_1433 at 1512.577 kb on + strand, within HP15_1433 at 1512.577 kb on + strand, within HP15_1433 at 1512.585 kb on - strand, within HP15_1433 at 1512.585 kb on - strand, within HP15_1433 at 1512.585 kb on - strand, within HP15_1433 at 1512.662 kb on - strand, within HP15_1433 at 1512.852 kb on + strand at 1512.968 kb on - strand, within HP15_1434
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 4 remove 1,510,787 + HP15_1430 0.56 -0.6 1,510,787 + HP15_1430 0.56 +0.3 1,510,816 + HP15_1430 0.61 +1.0 1,510,816 + HP15_1430 0.61 -0.1 1,510,816 + HP15_1430 0.61 +1.2 1,510,816 + HP15_1430 0.61 +1.5 1,510,824 - HP15_1430 0.62 +0.8 1,510,856 - HP15_1430 0.67 -0.2 1,510,872 + HP15_1430 0.70 -1.5 1,511,029 + -0.9 1,511,054 + -0.3 1,511,145 + -2.6 1,511,153 - +0.8 1,511,257 - +0.1 1,511,480 - -0.4 1,511,669 - +0.3 1,511,937 + HP15_1431 0.87 -1.3 1,511,947 + -0.4 1,511,971 - +0.4 1,512,020 + +1.0 1,512,046 - -0.7 1,512,106 + HP15_1432 0.24 -0.1 1,512,114 - HP15_1432 0.27 +1.7 1,512,114 - HP15_1432 0.27 +0.6 1,512,348 - +0.6 1,512,513 - HP15_1433 0.25 +0.5 1,512,577 + HP15_1433 0.38 +0.2 1,512,577 + HP15_1433 0.38 -0.1 1,512,585 - HP15_1433 0.39 +1.0 1,512,585 - HP15_1433 0.39 +0.7 1,512,585 - HP15_1433 0.39 -3.4 1,512,662 - HP15_1433 0.55 -0.7 1,512,852 + -0.6 1,512,968 - HP15_1434 0.25 -0.3
Or see this region's nucleotide sequence