Experiment: monoculture; Experiment B, time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_972 and HP15_973 are separated by 204 nucleotides HP15_973 and HP15_974 are separated by 99 nucleotides HP15_974 and HP15_975 are separated by 696 nucleotides HP15_975 and HP15_976 are separated by 104 nucleotides
HP15_972: HP15_972 - hypothetical protein, at 983,629 to 984,114
_972
HP15_973: HP15_973 - conserved hypothetical protein, at 984,319 to 984,501
_973
HP15_974: HP15_974 - hypothetical protein, at 984,601 to 984,933
_974
HP15_975: HP15_975 - hypothetical protein, at 985,630 to 985,800
_975
HP15_976: HP15_976 - acetyltransferase, GNAT family protein-like protein, at 985,905 to 986,369
_976
Position (kb) 984
985 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 983.657 kb on - strand at 983.709 kb on - strand, within HP15_972 at 983.721 kb on - strand, within HP15_972 at 983.871 kb on + strand, within HP15_972 at 984.040 kb on + strand, within HP15_972 at 984.047 kb on + strand, within HP15_972 at 984.239 kb on - strand at 984.295 kb on + strand at 984.295 kb on - strand at 984.481 kb on - strand, within HP15_973 at 984.481 kb on - strand, within HP15_973 at 984.517 kb on + strand at 984.532 kb on - strand at 984.651 kb on - strand, within HP15_974 at 984.734 kb on + strand, within HP15_974 at 984.787 kb on + strand, within HP15_974 at 984.952 kb on + strand at 984.990 kb on + strand at 985.055 kb on + strand at 985.063 kb on - strand at 985.132 kb on + strand at 985.132 kb on + strand at 985.132 kb on + strand at 985.151 kb on - strand at 985.178 kb on - strand at 985.255 kb on - strand at 985.363 kb on + strand at 985.526 kb on + strand at 985.668 kb on - strand, within HP15_975 at 985.695 kb on + strand, within HP15_975 at 985.783 kb on - strand, within HP15_975 at 985.797 kb on + strand at 985.882 kb on - strand at 985.889 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 3 remove 983,657 - -0.4 983,709 - HP15_972 0.16 -1.5 983,721 - HP15_972 0.19 +0.9 983,871 + HP15_972 0.50 -0.5 984,040 + HP15_972 0.85 +0.6 984,047 + HP15_972 0.86 -1.2 984,239 - +0.4 984,295 + +0.6 984,295 - -0.2 984,481 - HP15_973 0.89 -0.8 984,481 - HP15_973 0.89 -0.1 984,517 + -0.1 984,532 - -0.1 984,651 - HP15_974 0.15 +1.6 984,734 + HP15_974 0.40 -2.8 984,787 + HP15_974 0.56 +1.2 984,952 + +0.1 984,990 + +0.4 985,055 + -0.3 985,063 - -2.1 985,132 + -0.4 985,132 + +1.5 985,132 + -0.6 985,151 - -0.1 985,178 - +1.0 985,255 - +0.0 985,363 + -2.8 985,526 + +0.3 985,668 - HP15_975 0.22 +0.8 985,695 + HP15_975 0.38 -0.6 985,783 - HP15_975 0.89 +1.1 985,797 + +0.5 985,882 - -0.0 985,889 - -1.5
Or see this region's nucleotide sequence