Experiment: monoculture; Experiment B, time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_801 and HP15_803 are separated by 26 nucleotides HP15_803 and HP15_804 overlap by 23 nucleotides HP15_804 and HP15_805 are separated by 48 nucleotides HP15_805 and HP15_806 are separated by 158 nucleotides
HP15_801: HP15_801 - NADH pyrophosphatase, at 817,991 to 818,818
_801
HP15_803: HP15_803 - glutamate racemase, at 818,845 to 819,678
_803
HP15_804: HP15_804 - protein containing DUF470, at 819,656 to 820,663
_804
HP15_805: HP15_805 - methylase involved in ubiquinone/menaquinone biosynthesis, at 820,712 to 821,440
_805
HP15_806: HP15_806 - response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s), at 821,599 to 823,773
_806
Position (kb) 819
820
821 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 819.612 kb on + strand at 819.646 kb on + strand at 819.853 kb on + strand, within HP15_804 at 820.168 kb on + strand, within HP15_804 at 820.238 kb on + strand, within HP15_804 at 820.246 kb on - strand, within HP15_804 at 820.313 kb on + strand, within HP15_804 at 820.365 kb on + strand, within HP15_804 at 820.423 kb on - strand, within HP15_804 at 820.562 kb on - strand, within HP15_804 at 820.616 kb on + strand at 820.616 kb on + strand at 820.616 kb on + strand at 820.624 kb on - strand at 820.626 kb on - strand at 820.627 kb on + strand at 820.640 kb on - strand at 820.640 kb on - strand at 820.710 kb on + strand at 820.800 kb on - strand, within HP15_805 at 820.820 kb on + strand, within HP15_805 at 820.820 kb on + strand, within HP15_805 at 820.855 kb on + strand, within HP15_805 at 821.027 kb on + strand, within HP15_805 at 821.176 kb on + strand, within HP15_805 at 821.184 kb on - strand, within HP15_805 at 821.184 kb on - strand, within HP15_805 at 821.490 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 3 remove 819,612 + -1.4 819,646 + -0.0 819,853 + HP15_804 0.20 +1.4 820,168 + HP15_804 0.51 +0.5 820,238 + HP15_804 0.58 +1.3 820,246 - HP15_804 0.59 -0.1 820,313 + HP15_804 0.65 +0.2 820,365 + HP15_804 0.70 +1.2 820,423 - HP15_804 0.76 +1.4 820,562 - HP15_804 0.90 +1.2 820,616 + -0.5 820,616 + +0.1 820,616 + -0.5 820,624 - +0.2 820,626 - +0.9 820,627 + -0.9 820,640 - -1.2 820,640 - -0.8 820,710 + -0.2 820,800 - HP15_805 0.12 +0.4 820,820 + HP15_805 0.15 +1.4 820,820 + HP15_805 0.15 +0.4 820,855 + HP15_805 0.20 -1.0 821,027 + HP15_805 0.43 -0.5 821,176 + HP15_805 0.64 +0.9 821,184 - HP15_805 0.65 -3.5 821,184 - HP15_805 0.65 +0.9 821,490 + -0.8
Or see this region's nucleotide sequence