Experiment: monoculture; Experiment B, time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_798 and HP15_799 are separated by 133 nucleotides HP15_799 and HP15_800 overlap by 1 nucleotides HP15_800 and HP15_802 are separated by 6 nucleotides
HP15_798: HP15_798 - peptidase M22, glycoprotease, at 813,344 to 814,039
_798
HP15_799: HP15_799 - undecaprenyl pyrophosphate phosphatase-like protein, at 814,173 to 814,535
_799
HP15_800: HP15_800 - protein YhiQ, at 814,535 to 815,374
_800
HP15_802: HP15_802 - glycerol-3-phosphate acyltransferase, at 815,381 to 817,849
_802
Position (kb) 814
815
816 Strain fitness (log2 ratio) -1
0
1
2 at 814.039 kb on - strand at 814.108 kb on - strand at 814.232 kb on + strand, within HP15_799 at 814.430 kb on - strand, within HP15_799 at 814.570 kb on + strand at 814.623 kb on - strand, within HP15_800 at 814.714 kb on - strand, within HP15_800 at 814.739 kb on - strand, within HP15_800 at 814.888 kb on - strand, within HP15_800 at 814.919 kb on + strand, within HP15_800 at 814.947 kb on + strand, within HP15_800 at 814.947 kb on + strand, within HP15_800 at 814.955 kb on - strand, within HP15_800 at 814.991 kb on + strand, within HP15_800 at 815.020 kb on - strand, within HP15_800 at 815.062 kb on + strand, within HP15_800 at 815.342 kb on + strand at 815.429 kb on + strand at 815.435 kb on - strand at 815.473 kb on + strand at 815.481 kb on - strand at 815.491 kb on - strand at 815.491 kb on - strand at 815.522 kb on - strand at 815.546 kb on + strand at 815.675 kb on + strand, within HP15_802 at 815.720 kb on + strand, within HP15_802 at 815.735 kb on - strand, within HP15_802 at 815.899 kb on - strand, within HP15_802 at 815.899 kb on - strand, within HP15_802 at 815.906 kb on + strand, within HP15_802 at 815.972 kb on + strand, within HP15_802 at 816.131 kb on - strand, within HP15_802 at 816.141 kb on - strand, within HP15_802 at 816.167 kb on - strand, within HP15_802 at 816.167 kb on - strand, within HP15_802 at 816.167 kb on - strand, within HP15_802 at 816.305 kb on - strand, within HP15_802 at 816.324 kb on + strand, within HP15_802
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 3 remove 814,039 - -1.7 814,108 - -0.5 814,232 + HP15_799 0.16 +0.9 814,430 - HP15_799 0.71 -0.4 814,570 + +0.1 814,623 - HP15_800 0.10 -0.1 814,714 - HP15_800 0.21 +1.5 814,739 - HP15_800 0.24 +1.7 814,888 - HP15_800 0.42 -0.5 814,919 + HP15_800 0.46 +1.7 814,947 + HP15_800 0.49 +2.3 814,947 + HP15_800 0.49 +0.1 814,955 - HP15_800 0.50 +0.9 814,991 + HP15_800 0.54 -1.1 815,020 - HP15_800 0.58 +0.1 815,062 + HP15_800 0.63 +0.5 815,342 + +0.3 815,429 + +0.1 815,435 - -0.6 815,473 + -1.1 815,481 - +1.1 815,491 - -0.5 815,491 - +1.5 815,522 - -1.7 815,546 + +0.0 815,675 + HP15_802 0.12 +0.6 815,720 + HP15_802 0.14 -1.2 815,735 - HP15_802 0.14 -1.3 815,899 - HP15_802 0.21 -0.6 815,899 - HP15_802 0.21 +0.8 815,906 + HP15_802 0.21 +0.6 815,972 + HP15_802 0.24 -1.0 816,131 - HP15_802 0.30 -1.5 816,141 - HP15_802 0.31 +1.1 816,167 - HP15_802 0.32 +0.5 816,167 - HP15_802 0.32 -0.7 816,167 - HP15_802 0.32 +1.2 816,305 - HP15_802 0.37 +0.1 816,324 + HP15_802 0.38 +1.5
Or see this region's nucleotide sequence