Experiment: monoculture; Experiment B, time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_731 and HP15_732 are separated by 40 nucleotides HP15_732 and HP15_733 are separated by 3 nucleotides HP15_733 and HP15_734 are separated by 77 nucleotides HP15_734 and HP15_735 overlap by 4 nucleotides
HP15_731: HP15_731 - conserved hypothetical protein, at 741,661 to 742,668
_731
HP15_732: HP15_732 - septum formation topological specificity factor MinE, at 742,709 to 742,960
_732
HP15_733: HP15_733 - cell division inhibitor MinD, at 742,964 to 743,776
_733
HP15_734: HP15_734 - septum site-determining protein MinC, at 743,854 to 744,615
_734
HP15_735: HP15_735 - type III effector HopPmaJ, at 744,612 to 745,001
_735
Position (kb) 742
743
744 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 742.009 kb on - strand, within HP15_731 at 742.019 kb on - strand, within HP15_731 at 742.071 kb on + strand, within HP15_731 at 742.190 kb on + strand, within HP15_731 at 742.203 kb on - strand, within HP15_731 at 742.236 kb on + strand, within HP15_731 at 742.285 kb on + strand, within HP15_731 at 742.331 kb on - strand, within HP15_731 at 742.336 kb on + strand, within HP15_731 at 742.443 kb on + strand, within HP15_731 at 742.979 kb on - strand at 743.123 kb on + strand, within HP15_733 at 743.227 kb on + strand, within HP15_733 at 743.363 kb on + strand, within HP15_733 at 743.381 kb on - strand, within HP15_733 at 743.522 kb on + strand, within HP15_733 at 743.600 kb on + strand, within HP15_733 at 743.608 kb on - strand, within HP15_733 at 743.608 kb on - strand, within HP15_733 at 743.608 kb on - strand, within HP15_733 at 743.645 kb on + strand, within HP15_733 at 743.692 kb on + strand, within HP15_733 at 743.858 kb on + strand at 744.043 kb on + strand, within HP15_734 at 744.418 kb on + strand, within HP15_734 at 744.424 kb on - strand, within HP15_734 at 744.546 kb on - strand at 744.546 kb on - strand at 744.650 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 3 remove 742,009 - HP15_731 0.35 +0.9 742,019 - HP15_731 0.36 +0.9 742,071 + HP15_731 0.41 -1.1 742,190 + HP15_731 0.52 -2.8 742,203 - HP15_731 0.54 -0.2 742,236 + HP15_731 0.57 -0.8 742,285 + HP15_731 0.62 +0.5 742,331 - HP15_731 0.66 -0.3 742,336 + HP15_731 0.67 +0.0 742,443 + HP15_731 0.78 +0.7 742,979 - -0.6 743,123 + HP15_733 0.20 +1.5 743,227 + HP15_733 0.32 -1.7 743,363 + HP15_733 0.49 +0.1 743,381 - HP15_733 0.51 -1.1 743,522 + HP15_733 0.69 -1.2 743,600 + HP15_733 0.78 -0.6 743,608 - HP15_733 0.79 +1.5 743,608 - HP15_733 0.79 -1.2 743,608 - HP15_733 0.79 -0.5 743,645 + HP15_733 0.84 -0.4 743,692 + HP15_733 0.90 -1.9 743,858 + +0.1 744,043 + HP15_734 0.25 +1.7 744,418 + HP15_734 0.74 +0.8 744,424 - HP15_734 0.75 +0.0 744,546 - +0.7 744,546 - +1.4 744,650 + -0.5
Or see this region's nucleotide sequence