Strain Fitness in Marinobacter adhaerens HP15 around HP15_56

Experiment: monoculture; Experiment B, time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_54 and HP15_55 are separated by 10 nucleotidesHP15_55 and HP15_56 are separated by 24 nucleotidesHP15_56 and HP15_57 are separated by 32 nucleotidesHP15_57 and HP15_58 are separated by 45 nucleotides HP15_54: HP15_54 - acyl-CoA dehydrogenase domain protein, at 59,443 to 60,501 _54 HP15_55: HP15_55 - enoyl-CoA hydratase/isomerase, at 60,512 to 61,312 _55 HP15_56: HP15_56 - acyl-CoA dehydrogenase domain protein, at 61,337 to 62,461 _56 HP15_57: HP15_57 - conserved hypothetical protein, at 62,494 to 63,393 _57 HP15_58: HP15_58 - GTP cyclohydrolase 1, at 63,439 to 64,068 _58 Position (kb) 61 62 63Strain fitness (log2 ratio) -2 -1 0 1 2at 60.337 kb on + strand, within HP15_54at 60.338 kb on - strand, within HP15_54at 60.338 kb on - strand, within HP15_54at 60.369 kb on + strand, within HP15_54at 60.397 kb on - strandat 60.439 kb on - strandat 60.570 kb on + strandat 60.577 kb on + strandat 60.578 kb on - strandat 60.578 kb on - strandat 60.635 kb on + strand, within HP15_55at 60.637 kb on + strand, within HP15_55at 60.637 kb on + strand, within HP15_55at 60.637 kb on + strand, within HP15_55at 60.643 kb on - strand, within HP15_55at 60.645 kb on - strand, within HP15_55at 60.645 kb on - strand, within HP15_55at 60.701 kb on + strand, within HP15_55at 60.709 kb on + strand, within HP15_55at 60.709 kb on + strand, within HP15_55at 60.741 kb on - strand, within HP15_55at 61.046 kb on + strand, within HP15_55at 61.046 kb on + strand, within HP15_55at 61.103 kb on + strand, within HP15_55at 61.103 kb on + strand, within HP15_55at 61.103 kb on + strand, within HP15_55at 61.110 kb on + strand, within HP15_55at 61.111 kb on - strand, within HP15_55at 61.118 kb on - strand, within HP15_55at 61.118 kb on - strand, within HP15_55at 61.128 kb on - strand, within HP15_55at 61.168 kb on + strand, within HP15_55at 61.186 kb on - strand, within HP15_55at 61.191 kb on - strand, within HP15_55at 61.212 kb on - strand, within HP15_55at 61.221 kb on - strand, within HP15_55at 61.221 kb on - strand, within HP15_55at 61.489 kb on + strand, within HP15_56at 61.499 kb on - strand, within HP15_56at 61.502 kb on - strand, within HP15_56at 61.550 kb on - strand, within HP15_56at 61.561 kb on + strand, within HP15_56at 61.733 kb on - strand, within HP15_56at 61.751 kb on + strand, within HP15_56at 61.759 kb on - strand, within HP15_56at 61.852 kb on - strand, within HP15_56at 61.943 kb on + strand, within HP15_56at 61.943 kb on + strand, within HP15_56at 61.951 kb on - strand, within HP15_56at 61.956 kb on - strand, within HP15_56at 61.956 kb on - strand, within HP15_56at 61.988 kb on + strand, within HP15_56at 61.988 kb on + strand, within HP15_56at 61.998 kb on + strand, within HP15_56at 62.026 kb on - strand, within HP15_56at 62.218 kb on - strand, within HP15_56at 62.243 kb on + strand, within HP15_56at 62.250 kb on + strand, within HP15_56at 62.266 kb on + strand, within HP15_56at 62.287 kb on + strand, within HP15_56at 62.303 kb on - strand, within HP15_56at 62.346 kb on - strand, within HP15_56at 62.415 kb on - strandat 62.481 kb on + strandat 62.487 kb on - strandat 62.516 kb on - strandat 62.536 kb on - strandat 62.577 kb on - strandat 62.590 kb on - strand, within HP15_57at 62.649 kb on - strand, within HP15_57at 62.654 kb on - strand, within HP15_57at 62.656 kb on + strand, within HP15_57at 62.666 kb on + strand, within HP15_57at 62.682 kb on + strand, within HP15_57at 62.786 kb on + strand, within HP15_57at 62.799 kb on - strand, within HP15_57at 62.837 kb on + strand, within HP15_57at 62.837 kb on + strand, within HP15_57at 62.873 kb on - strand, within HP15_57at 62.888 kb on - strand, within HP15_57at 62.920 kb on - strand, within HP15_57at 63.140 kb on + strand, within HP15_57at 63.201 kb on + strand, within HP15_57at 63.313 kb on - strandat 63.343 kb on - strandat 63.461 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 3
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60,337 + HP15_54 0.84 -1.5
60,338 - HP15_54 0.85 +1.0
60,338 - HP15_54 0.85 +0.3
60,369 + HP15_54 0.87 +0.8
60,397 - +1.2
60,439 - -1.0
60,570 + +0.6
60,577 + +0.2
60,578 - -0.4
60,578 - -2.3
60,635 + HP15_55 0.15 +0.5
60,637 + HP15_55 0.16 -0.1
60,637 + HP15_55 0.16 -0.2
60,637 + HP15_55 0.16 +0.2
60,643 - HP15_55 0.16 -0.5
60,645 - HP15_55 0.17 -0.1
60,645 - HP15_55 0.17 +0.3
60,701 + HP15_55 0.24 +0.5
60,709 + HP15_55 0.25 +0.9
60,709 + HP15_55 0.25 +0.1
60,741 - HP15_55 0.29 -1.1
61,046 + HP15_55 0.67 +0.4
61,046 + HP15_55 0.67 +0.8
61,103 + HP15_55 0.74 +0.2
61,103 + HP15_55 0.74 +1.7
61,103 + HP15_55 0.74 -0.6
61,110 + HP15_55 0.75 +0.6
61,111 - HP15_55 0.75 -2.0
61,118 - HP15_55 0.76 -0.5
61,118 - HP15_55 0.76 +2.0
61,128 - HP15_55 0.77 +0.9
61,168 + HP15_55 0.82 +2.1
61,186 - HP15_55 0.84 -0.1
61,191 - HP15_55 0.85 -0.1
61,212 - HP15_55 0.87 +0.6
61,221 - HP15_55 0.89 +0.1
61,221 - HP15_55 0.89 +0.7
61,489 + HP15_56 0.14 -0.3
61,499 - HP15_56 0.14 -1.0
61,502 - HP15_56 0.15 +0.7
61,550 - HP15_56 0.19 -0.9
61,561 + HP15_56 0.20 -0.7
61,733 - HP15_56 0.35 -1.0
61,751 + HP15_56 0.37 +1.3
61,759 - HP15_56 0.38 -1.1
61,852 - HP15_56 0.46 -1.4
61,943 + HP15_56 0.54 +0.2
61,943 + HP15_56 0.54 -1.2
61,951 - HP15_56 0.55 +0.3
61,956 - HP15_56 0.55 -0.1
61,956 - HP15_56 0.55 -0.9
61,988 + HP15_56 0.58 -0.0
61,988 + HP15_56 0.58 +1.0
61,998 + HP15_56 0.59 +2.2
62,026 - HP15_56 0.61 -0.4
62,218 - HP15_56 0.78 -0.1
62,243 + HP15_56 0.81 +1.1
62,250 + HP15_56 0.81 +1.2
62,266 + HP15_56 0.83 +1.7
62,287 + HP15_56 0.84 +0.5
62,303 - HP15_56 0.86 -0.9
62,346 - HP15_56 0.90 +1.4
62,415 - -1.0
62,481 + -0.1
62,487 - -0.8
62,516 - -2.1
62,536 - +0.8
62,577 - -0.3
62,590 - HP15_57 0.11 +0.6
62,649 - HP15_57 0.17 +2.7
62,654 - HP15_57 0.18 +0.1
62,656 + HP15_57 0.18 -1.2
62,666 + HP15_57 0.19 +1.0
62,682 + HP15_57 0.21 -0.2
62,786 + HP15_57 0.32 +0.2
62,799 - HP15_57 0.34 +0.5
62,837 + HP15_57 0.38 -0.2
62,837 + HP15_57 0.38 +1.5
62,873 - HP15_57 0.42 +0.5
62,888 - HP15_57 0.44 +1.3
62,920 - HP15_57 0.47 +2.2
63,140 + HP15_57 0.72 +1.4
63,201 + HP15_57 0.79 +1.0
63,313 - +0.6
63,343 - +0.8
63,461 - +0.3

Or see this region's nucleotide sequence