Experiment: monoculture; Experiment B, time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_453 and HP15_454 are separated by 61 nucleotides HP15_454 and HP15_455 overlap by 1 nucleotides HP15_455 and HP15_456 are separated by 202 nucleotides
HP15_453: HP15_453 - thiamine biosynthesis protein thiC, at 457,555 to 459,450
_453
HP15_454: HP15_454 - nucleoside diphosphate pyrophosphatase, at 459,512 to 460,129
_454
HP15_455: HP15_455 - protein containing DUF1249, at 460,129 to 460,614
_455
HP15_456: HP15_456 - phosphohydrolase, at 460,817 to 461,623
_456
Position (kb) 460
461 Strain fitness (log2 ratio) -2
-1
0
1
2 at 459.601 kb on - strand, within HP15_454 at 459.606 kb on - strand, within HP15_454 at 459.649 kb on - strand, within HP15_454 at 459.678 kb on + strand, within HP15_454 at 459.678 kb on + strand, within HP15_454 at 459.681 kb on + strand, within HP15_454 at 459.711 kb on + strand, within HP15_454 at 459.714 kb on - strand, within HP15_454 at 459.719 kb on - strand, within HP15_454 at 459.738 kb on - strand, within HP15_454 at 459.738 kb on - strand, within HP15_454 at 459.751 kb on - strand, within HP15_454 at 459.802 kb on - strand, within HP15_454 at 459.855 kb on - strand, within HP15_454 at 459.933 kb on - strand, within HP15_454 at 459.991 kb on + strand, within HP15_454 at 460.084 kb on - strand at 460.086 kb on + strand at 460.179 kb on + strand, within HP15_455 at 460.187 kb on - strand, within HP15_455 at 460.637 kb on - strand at 460.701 kb on + strand at 460.710 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 3 remove 459,601 - HP15_454 0.14 -2.0 459,606 - HP15_454 0.15 -2.2 459,649 - HP15_454 0.22 -0.1 459,678 + HP15_454 0.27 -0.5 459,678 + HP15_454 0.27 -0.9 459,681 + HP15_454 0.27 -1.1 459,711 + HP15_454 0.32 -0.3 459,714 - HP15_454 0.33 -0.6 459,719 - HP15_454 0.33 +0.0 459,738 - HP15_454 0.37 -0.8 459,738 - HP15_454 0.37 -0.3 459,751 - HP15_454 0.39 -0.1 459,802 - HP15_454 0.47 +1.0 459,855 - HP15_454 0.56 +2.5 459,933 - HP15_454 0.68 -2.0 459,991 + HP15_454 0.78 +0.3 460,084 - +1.0 460,086 + -2.5 460,179 + HP15_455 0.10 +1.7 460,187 - HP15_455 0.12 -0.3 460,637 - -0.2 460,701 + -0.5 460,710 - -1.7
Or see this region's nucleotide sequence