Experiment: monoculture; Experiment B, time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_p187g91 and HP15_p187g92 are separated by 151 nucleotides HP15_p187g92 and HP15_p187g93 are separated by 182 nucleotides HP15_p187g93 and HP15_p187g94 are separated by 193 nucleotides
HP15_p187g91: HP15_p187g91 - protein containing chemotaxis methyl-accepting receptor, signaling, PAS fold protein, at 87,261 to 88,886
_p187g91
HP15_p187g92: HP15_p187g92 - hypothetical protein, at 89,038 to 89,142
_p187g92
HP15_p187g93: HP15_p187g93 - transcriptional activator RfaH, at 89,325 to 89,762
_p187g93
HP15_p187g94: HP15_p187g94 - radical SAM domain protein, at 89,956 to 91,000
_p187g94
Position (kb) 89
90 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 88.358 kb on + strand, within HP15_p187g91 at 88.358 kb on + strand, within HP15_p187g91 at 88.359 kb on + strand, within HP15_p187g91 at 88.359 kb on + strand, within HP15_p187g91 at 88.359 kb on + strand, within HP15_p187g91 at 88.364 kb on + strand, within HP15_p187g91 at 88.366 kb on - strand, within HP15_p187g91 at 88.367 kb on - strand, within HP15_p187g91 at 88.393 kb on - strand, within HP15_p187g91 at 88.398 kb on + strand, within HP15_p187g91 at 88.406 kb on + strand, within HP15_p187g91 at 88.406 kb on + strand, within HP15_p187g91 at 88.409 kb on + strand, within HP15_p187g91 at 88.409 kb on + strand, within HP15_p187g91 at 88.414 kb on - strand, within HP15_p187g91 at 88.414 kb on - strand, within HP15_p187g91 at 88.414 kb on - strand, within HP15_p187g91 at 88.414 kb on - strand, within HP15_p187g91 at 88.417 kb on - strand, within HP15_p187g91 at 88.417 kb on - strand, within HP15_p187g91 at 88.453 kb on + strand, within HP15_p187g91 at 88.660 kb on + strand, within HP15_p187g91 at 88.660 kb on + strand, within HP15_p187g91 at 88.660 kb on + strand, within HP15_p187g91 at 88.668 kb on - strand, within HP15_p187g91 at 88.674 kb on + strand, within HP15_p187g91 at 88.682 kb on + strand, within HP15_p187g91 at 88.682 kb on + strand, within HP15_p187g91 at 88.732 kb on + strand at 88.740 kb on - strand at 88.740 kb on - strand at 88.740 kb on - strand at 88.769 kb on + strand at 88.777 kb on - strand at 88.777 kb on - strand at 88.777 kb on - strand at 88.787 kb on - strand at 88.911 kb on - strand at 88.951 kb on + strand at 88.951 kb on + strand at 88.981 kb on + strand at 88.981 kb on + strand at 88.989 kb on - strand at 88.989 kb on - strand at 88.989 kb on - strand at 88.994 kb on + strand at 89.067 kb on + strand, within HP15_p187g92 at 89.074 kb on - strand, within HP15_p187g92 at 89.095 kb on - strand, within HP15_p187g92 at 89.099 kb on + strand, within HP15_p187g92 at 89.099 kb on + strand, within HP15_p187g92 at 89.107 kb on - strand, within HP15_p187g92 at 89.143 kb on + strand at 89.147 kb on + strand at 89.203 kb on - strand at 89.206 kb on + strand at 89.213 kb on + strand at 89.219 kb on - strand at 89.220 kb on + strand at 89.243 kb on - strand at 89.256 kb on - strand at 89.290 kb on - strand at 89.337 kb on + strand at 89.383 kb on + strand, within HP15_p187g93 at 89.393 kb on + strand, within HP15_p187g93 at 89.401 kb on - strand, within HP15_p187g93 at 89.401 kb on - strand, within HP15_p187g93 at 89.414 kb on - strand, within HP15_p187g93 at 89.422 kb on + strand, within HP15_p187g93 at 89.451 kb on - strand, within HP15_p187g93 at 89.482 kb on + strand, within HP15_p187g93 at 89.501 kb on - strand, within HP15_p187g93 at 89.505 kb on + strand, within HP15_p187g93 at 89.554 kb on - strand, within HP15_p187g93 at 89.554 kb on - strand, within HP15_p187g93 at 89.603 kb on + strand, within HP15_p187g93 at 89.669 kb on + strand, within HP15_p187g93 at 89.676 kb on - strand, within HP15_p187g93 at 89.698 kb on - strand, within HP15_p187g93 at 89.782 kb on + strand at 89.782 kb on + strand at 89.782 kb on + strand at 89.785 kb on - strand at 89.785 kb on - strand at 89.790 kb on - strand at 89.790 kb on - strand at 89.790 kb on - strand at 89.823 kb on + strand at 89.823 kb on + strand at 89.823 kb on + strand at 89.836 kb on - strand at 89.914 kb on + strand at 89.916 kb on + strand at 89.941 kb on + strand at 89.951 kb on + strand at 89.951 kb on + strand at 89.951 kb on + strand at 89.951 kb on + strand at 89.951 kb on + strand at 89.959 kb on - strand at 89.959 kb on - strand at 89.959 kb on - strand at 89.959 kb on - strand at 89.959 kb on - strand at 89.959 kb on - strand at 89.959 kb on - strand at 89.973 kb on + strand at 90.024 kb on + strand at 90.032 kb on - strand at 90.044 kb on + strand at 90.111 kb on + strand, within HP15_p187g94 at 90.138 kb on + strand, within HP15_p187g94 at 90.138 kb on + strand, within HP15_p187g94 at 90.138 kb on + strand, within HP15_p187g94 at 90.138 kb on + strand, within HP15_p187g94 at 90.167 kb on - strand, within HP15_p187g94 at 90.167 kb on - strand, within HP15_p187g94 at 90.176 kb on - strand, within HP15_p187g94 at 90.292 kb on + strand, within HP15_p187g94 at 90.305 kb on + strand, within HP15_p187g94 at 90.395 kb on + strand, within HP15_p187g94 at 90.395 kb on + strand, within HP15_p187g94 at 90.400 kb on + strand, within HP15_p187g94 at 90.426 kb on + strand, within HP15_p187g94 at 90.444 kb on + strand, within HP15_p187g94 at 90.474 kb on - strand, within HP15_p187g94 at 90.499 kb on + strand, within HP15_p187g94 at 90.499 kb on - strand, within HP15_p187g94 at 90.596 kb on - strand, within HP15_p187g94 at 90.596 kb on - strand, within HP15_p187g94 at 90.596 kb on - strand, within HP15_p187g94 at 90.596 kb on - strand, within HP15_p187g94 at 90.689 kb on + strand, within HP15_p187g94 at 90.697 kb on - strand, within HP15_p187g94 at 90.713 kb on + strand, within HP15_p187g94 at 90.715 kb on + strand, within HP15_p187g94 at 90.727 kb on - strand, within HP15_p187g94 at 90.744 kb on + strand, within HP15_p187g94 at 90.762 kb on + strand, within HP15_p187g94
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 3 remove 88,358 + HP15_p187g91 0.67 -0.2 88,358 + HP15_p187g91 0.67 -2.2 88,359 + HP15_p187g91 0.68 -0.8 88,359 + HP15_p187g91 0.68 -0.4 88,359 + HP15_p187g91 0.68 +0.9 88,364 + HP15_p187g91 0.68 +0.3 88,366 - HP15_p187g91 0.68 -1.0 88,367 - HP15_p187g91 0.68 +1.1 88,393 - HP15_p187g91 0.70 +2.5 88,398 + HP15_p187g91 0.70 +1.0 88,406 + HP15_p187g91 0.70 -0.4 88,406 + HP15_p187g91 0.70 +0.5 88,409 + HP15_p187g91 0.71 +0.3 88,409 + HP15_p187g91 0.71 -0.7 88,414 - HP15_p187g91 0.71 -2.5 88,414 - HP15_p187g91 0.71 -0.1 88,414 - HP15_p187g91 0.71 -1.4 88,414 - HP15_p187g91 0.71 +0.7 88,417 - HP15_p187g91 0.71 -1.4 88,417 - HP15_p187g91 0.71 -1.0 88,453 + HP15_p187g91 0.73 +0.0 88,660 + HP15_p187g91 0.86 -1.4 88,660 + HP15_p187g91 0.86 +1.8 88,660 + HP15_p187g91 0.86 +0.5 88,668 - HP15_p187g91 0.87 +0.5 88,674 + HP15_p187g91 0.87 -0.7 88,682 + HP15_p187g91 0.87 -1.5 88,682 + HP15_p187g91 0.87 +0.5 88,732 + +1.0 88,740 - +0.7 88,740 - +0.6 88,740 - -1.2 88,769 + +1.1 88,777 - +0.8 88,777 - +1.0 88,777 - +0.7 88,787 - +0.7 88,911 - -0.2 88,951 + +0.0 88,951 + +0.6 88,981 + +1.0 88,981 + +0.3 88,989 - -0.7 88,989 - -1.7 88,989 - +1.6 88,994 + +0.7 89,067 + HP15_p187g92 0.28 +0.8 89,074 - HP15_p187g92 0.34 -0.1 89,095 - HP15_p187g92 0.54 +2.3 89,099 + HP15_p187g92 0.58 -0.2 89,099 + HP15_p187g92 0.58 +2.3 89,107 - HP15_p187g92 0.66 -0.9 89,143 + +1.3 89,147 + -0.7 89,203 - +0.2 89,206 + +0.0 89,213 + +0.8 89,219 - +0.5 89,220 + -2.0 89,243 - +0.9 89,256 - -0.7 89,290 - +1.5 89,337 + -0.2 89,383 + HP15_p187g93 0.13 +1.4 89,393 + HP15_p187g93 0.16 -1.4 89,401 - HP15_p187g93 0.17 -2.9 89,401 - HP15_p187g93 0.17 +2.2 89,414 - HP15_p187g93 0.20 -0.2 89,422 + HP15_p187g93 0.22 +0.7 89,451 - HP15_p187g93 0.29 +0.7 89,482 + HP15_p187g93 0.36 +0.8 89,501 - HP15_p187g93 0.40 +1.5 89,505 + HP15_p187g93 0.41 -0.2 89,554 - HP15_p187g93 0.52 -0.2 89,554 - HP15_p187g93 0.52 -0.0 89,603 + HP15_p187g93 0.63 +0.5 89,669 + HP15_p187g93 0.79 +1.0 89,676 - HP15_p187g93 0.80 -0.9 89,698 - HP15_p187g93 0.85 +1.2 89,782 + +1.7 89,782 + +0.3 89,782 + -0.6 89,785 - +0.7 89,785 - -0.3 89,790 - +1.0 89,790 - +0.4 89,790 - +0.5 89,823 + +0.9 89,823 + +0.9 89,823 + -1.3 89,836 - -0.8 89,914 + +0.2 89,916 + +1.8 89,941 + -2.4 89,951 + +0.7 89,951 + +1.4 89,951 + +1.2 89,951 + -0.0 89,951 + +0.1 89,959 - -0.4 89,959 - -0.5 89,959 - +1.0 89,959 - -0.5 89,959 - +1.2 89,959 - -1.2 89,959 - -0.1 89,973 + -0.8 90,024 + +1.0 90,032 - -0.1 90,044 + -1.9 90,111 + HP15_p187g94 0.15 +0.1 90,138 + HP15_p187g94 0.17 -0.3 90,138 + HP15_p187g94 0.17 -0.2 90,138 + HP15_p187g94 0.17 +1.2 90,138 + HP15_p187g94 0.17 +1.4 90,167 - HP15_p187g94 0.20 +1.1 90,167 - HP15_p187g94 0.20 -0.7 90,176 - HP15_p187g94 0.21 -0.9 90,292 + HP15_p187g94 0.32 +0.8 90,305 + HP15_p187g94 0.33 -0.9 90,395 + HP15_p187g94 0.42 -0.0 90,395 + HP15_p187g94 0.42 +0.9 90,400 + HP15_p187g94 0.42 -0.5 90,426 + HP15_p187g94 0.45 -2.2 90,444 + HP15_p187g94 0.47 +0.9 90,474 - HP15_p187g94 0.50 +0.3 90,499 + HP15_p187g94 0.52 +0.9 90,499 - HP15_p187g94 0.52 -0.4 90,596 - HP15_p187g94 0.61 -0.0 90,596 - HP15_p187g94 0.61 +0.0 90,596 - HP15_p187g94 0.61 +0.5 90,596 - HP15_p187g94 0.61 +0.6 90,689 + HP15_p187g94 0.70 +0.4 90,697 - HP15_p187g94 0.71 -0.8 90,713 + HP15_p187g94 0.72 +0.1 90,715 + HP15_p187g94 0.73 +0.6 90,727 - HP15_p187g94 0.74 +0.9 90,744 + HP15_p187g94 0.75 +0.1 90,762 + HP15_p187g94 0.77 -0.6
Or see this region's nucleotide sequence