Experiment: monoculture; Experiment B, time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_p187g32 and HP15_p187g33 are separated by 6 nucleotides HP15_p187g33 and HP15_p187g34 are separated by 437 nucleotides HP15_p187g34 and HP15_p187g35 are separated by 475 nucleotides
HP15_p187g32: HP15_p187g32 - helix-turn-helix- domain containing protein AraC-type, at 24,407 to 25,261
_p187g32
HP15_p187g33: HP15_p187g33 - conserved hypothetical protein, membrane, at 25,268 to 25,681
_p187g33
HP15_p187g34: HP15_p187g34 - uncharacterized conserved protein, HipA-like protein, at 26,119 to 27,468
_p187g34
HP15_p187g35: HP15_p187g35 - hypothetical protein, at 27,944 to 28,771
_p187g35
Position (kb) 26
27
28 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 25.206 kb on - strand at 25.206 kb on - strand at 25.213 kb on - strand at 25.237 kb on + strand at 25.251 kb on + strand at 25.253 kb on + strand at 25.277 kb on + strand at 25.331 kb on + strand, within HP15_p187g33 at 25.408 kb on - strand, within HP15_p187g33 at 25.507 kb on + strand, within HP15_p187g33 at 25.515 kb on - strand, within HP15_p187g33 at 25.522 kb on - strand, within HP15_p187g33 at 25.522 kb on - strand, within HP15_p187g33 at 25.539 kb on + strand, within HP15_p187g33 at 25.546 kb on - strand, within HP15_p187g33 at 25.736 kb on + strand at 25.744 kb on - strand at 25.782 kb on + strand at 25.828 kb on - strand at 25.871 kb on + strand at 25.879 kb on - strand at 25.900 kb on + strand at 25.947 kb on - strand at 25.975 kb on + strand at 25.985 kb on - strand at 26.117 kb on + strand at 26.123 kb on + strand at 26.248 kb on + strand at 26.346 kb on + strand, within HP15_p187g34 at 26.356 kb on + strand, within HP15_p187g34 at 26.400 kb on + strand, within HP15_p187g34 at 26.414 kb on + strand, within HP15_p187g34 at 26.525 kb on + strand, within HP15_p187g34 at 26.591 kb on + strand, within HP15_p187g34 at 26.599 kb on - strand, within HP15_p187g34 at 26.599 kb on - strand, within HP15_p187g34 at 26.745 kb on + strand, within HP15_p187g34 at 26.834 kb on + strand, within HP15_p187g34 at 26.868 kb on + strand, within HP15_p187g34 at 27.019 kb on + strand, within HP15_p187g34 at 27.033 kb on + strand, within HP15_p187g34 at 27.033 kb on + strand, within HP15_p187g34 at 27.045 kb on + strand, within HP15_p187g34 at 27.085 kb on + strand, within HP15_p187g34 at 27.085 kb on + strand, within HP15_p187g34 at 27.085 kb on + strand, within HP15_p187g34 at 27.179 kb on + strand, within HP15_p187g34 at 27.185 kb on + strand, within HP15_p187g34 at 27.192 kb on + strand, within HP15_p187g34 at 27.357 kb on + strand at 27.372 kb on + strand at 27.456 kb on + strand at 27.470 kb on + strand at 27.487 kb on + strand at 27.487 kb on + strand at 27.769 kb on - strand at 27.817 kb on + strand at 27.839 kb on + strand at 27.850 kb on + strand at 27.851 kb on - strand at 27.874 kb on + strand at 27.882 kb on - strand at 27.932 kb on - strand at 27.937 kb on - strand at 28.052 kb on - strand, within HP15_p187g35 at 28.052 kb on - strand, within HP15_p187g35 at 28.117 kb on - strand, within HP15_p187g35 at 28.120 kb on + strand, within HP15_p187g35 at 28.151 kb on - strand, within HP15_p187g35 at 28.165 kb on + strand, within HP15_p187g35 at 28.187 kb on + strand, within HP15_p187g35 at 28.187 kb on + strand, within HP15_p187g35 at 28.187 kb on + strand, within HP15_p187g35 at 28.187 kb on + strand, within HP15_p187g35 at 28.195 kb on - strand, within HP15_p187g35 at 28.195 kb on - strand, within HP15_p187g35 at 28.195 kb on - strand, within HP15_p187g35 at 28.213 kb on + strand, within HP15_p187g35 at 28.245 kb on - strand, within HP15_p187g35 at 28.280 kb on + strand, within HP15_p187g35 at 28.438 kb on + strand, within HP15_p187g35 at 28.442 kb on + strand, within HP15_p187g35 at 28.446 kb on - strand, within HP15_p187g35 at 28.446 kb on - strand, within HP15_p187g35 at 28.446 kb on - strand, within HP15_p187g35 at 28.450 kb on - strand, within HP15_p187g35
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 3 remove 25,206 - +0.6 25,206 - -1.1 25,213 - +0.1 25,237 + +1.0 25,251 + +1.0 25,253 + +0.7 25,277 + +0.7 25,331 + HP15_p187g33 0.15 -0.4 25,408 - HP15_p187g33 0.34 -0.5 25,507 + HP15_p187g33 0.58 -2.8 25,515 - HP15_p187g33 0.60 +0.7 25,522 - HP15_p187g33 0.61 -0.7 25,522 - HP15_p187g33 0.61 +0.7 25,539 + HP15_p187g33 0.65 -0.2 25,546 - HP15_p187g33 0.67 +1.1 25,736 + +0.8 25,744 - -0.3 25,782 + -0.4 25,828 - +0.5 25,871 + +0.3 25,879 - +0.1 25,900 + +0.4 25,947 - -2.4 25,975 + -0.7 25,985 - -0.0 26,117 + +0.6 26,123 + +0.2 26,248 + +0.0 26,346 + HP15_p187g34 0.17 -1.4 26,356 + HP15_p187g34 0.18 +0.9 26,400 + HP15_p187g34 0.21 -0.6 26,414 + HP15_p187g34 0.22 -0.3 26,525 + HP15_p187g34 0.30 -0.7 26,591 + HP15_p187g34 0.35 +0.7 26,599 - HP15_p187g34 0.36 -1.9 26,599 - HP15_p187g34 0.36 -0.1 26,745 + HP15_p187g34 0.46 -0.3 26,834 + HP15_p187g34 0.53 +0.3 26,868 + HP15_p187g34 0.55 -0.5 27,019 + HP15_p187g34 0.67 -0.5 27,033 + HP15_p187g34 0.68 +0.7 27,033 + HP15_p187g34 0.68 -0.8 27,045 + HP15_p187g34 0.69 +1.1 27,085 + HP15_p187g34 0.72 -0.4 27,085 + HP15_p187g34 0.72 +1.2 27,085 + HP15_p187g34 0.72 +1.4 27,179 + HP15_p187g34 0.79 -1.2 27,185 + HP15_p187g34 0.79 -1.5 27,192 + HP15_p187g34 0.79 -0.7 27,357 + -0.4 27,372 + +0.6 27,456 + -1.0 27,470 + +0.7 27,487 + +0.1 27,487 + +0.5 27,769 - +0.7 27,817 + +0.4 27,839 + +0.7 27,850 + -1.2 27,851 - -0.1 27,874 + +1.2 27,882 - +1.1 27,932 - +0.3 27,937 - +1.3 28,052 - HP15_p187g35 0.13 +0.2 28,052 - HP15_p187g35 0.13 +0.3 28,117 - HP15_p187g35 0.21 -0.3 28,120 + HP15_p187g35 0.21 +0.6 28,151 - HP15_p187g35 0.25 -0.7 28,165 + HP15_p187g35 0.27 -0.3 28,187 + HP15_p187g35 0.29 +0.9 28,187 + HP15_p187g35 0.29 -1.6 28,187 + HP15_p187g35 0.29 +0.8 28,187 + HP15_p187g35 0.29 -0.6 28,195 - HP15_p187g35 0.30 +1.1 28,195 - HP15_p187g35 0.30 +0.7 28,195 - HP15_p187g35 0.30 -0.1 28,213 + HP15_p187g35 0.32 -1.8 28,245 - HP15_p187g35 0.36 -0.8 28,280 + HP15_p187g35 0.41 -0.6 28,438 + HP15_p187g35 0.60 +0.3 28,442 + HP15_p187g35 0.60 -0.2 28,446 - HP15_p187g35 0.61 +0.5 28,446 - HP15_p187g35 0.61 -1.1 28,446 - HP15_p187g35 0.61 +0.3 28,450 - HP15_p187g35 0.61 +0.9
Or see this region's nucleotide sequence