Experiment: monoculture; Experiment B, time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_p187g22 and HP15_p187g23 are separated by 245 nucleotides HP15_p187g23 and HP15_p187g24 overlap by 20 nucleotides HP15_p187g24 and HP15_p187g25 are separated by 153 nucleotides HP15_p187g25 and HP15_p187g26 are separated by 277 nucleotides HP15_p187g26 and HP15_p187g27 are separated by 124 nucleotides HP15_p187g27 and HP15_p187g28 are separated by 129 nucleotides
HP15_p187g22: HP15_p187g22 - hypothetical protein, at 19,783 to 19,905
_p187g22
HP15_p187g23: HP15_p187g23 - hypothetical protein, at 20,151 to 20,303
_p187g23
HP15_p187g24: HP15_p187g24 - conserved hypothetical protein, at 20,284 to 20,472
_p187g24
HP15_p187g25: HP15_p187g25 - membrane protein, at 20,626 to 20,931
_p187g25
HP15_p187g26: HP15_p187g26 - hypothetical protein, at 21,209 to 21,370
_p187g26
HP15_p187g27: HP15_p187g27 - hypothetical protein, at 21,495 to 21,662
_p187g27
HP15_p187g28: HP15_p187g28 - hypothetical protein, at 21,792 to 21,929
_p187g28
Position (kb) 20
21 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 19.645 kb on + strand at 19.645 kb on + strand at 19.645 kb on + strand at 19.653 kb on - strand at 19.653 kb on - strand at 19.653 kb on - strand at 19.757 kb on + strand at 19.765 kb on - strand at 19.809 kb on + strand, within HP15_p187g22 at 19.882 kb on + strand, within HP15_p187g22 at 19.883 kb on + strand, within HP15_p187g22 at 19.884 kb on + strand, within HP15_p187g22 at 19.888 kb on + strand, within HP15_p187g22 at 19.890 kb on + strand, within HP15_p187g22 at 19.900 kb on + strand at 19.900 kb on + strand at 19.907 kb on + strand at 19.915 kb on - strand at 19.917 kb on + strand at 19.942 kb on + strand at 19.972 kb on - strand at 19.990 kb on + strand at 19.995 kb on + strand at 20.003 kb on - strand at 20.019 kb on + strand at 20.022 kb on - strand at 20.116 kb on + strand at 20.150 kb on + strand at 20.183 kb on + strand, within HP15_p187g23 at 20.206 kb on + strand, within HP15_p187g23 at 20.260 kb on - strand, within HP15_p187g23 at 20.274 kb on - strand, within HP15_p187g23 at 20.400 kb on + strand, within HP15_p187g24 at 20.408 kb on - strand, within HP15_p187g24 at 20.444 kb on + strand, within HP15_p187g24 at 20.505 kb on - strand at 20.585 kb on - strand at 20.624 kb on - strand at 20.770 kb on + strand, within HP15_p187g25 at 20.770 kb on + strand, within HP15_p187g25 at 20.825 kb on + strand, within HP15_p187g25 at 20.862 kb on + strand, within HP15_p187g25 at 20.948 kb on - strand at 21.025 kb on - strand at 21.026 kb on + strand at 21.051 kb on + strand at 21.141 kb on + strand at 21.172 kb on + strand at 21.175 kb on - strand at 21.180 kb on - strand at 21.196 kb on - strand at 21.263 kb on - strand, within HP15_p187g26 at 21.265 kb on + strand, within HP15_p187g26 at 21.293 kb on + strand, within HP15_p187g26 at 21.311 kb on - strand, within HP15_p187g26 at 21.351 kb on + strand, within HP15_p187g26 at 21.356 kb on + strand at 21.364 kb on - strand at 21.382 kb on - strand at 21.431 kb on - strand at 21.518 kb on - strand, within HP15_p187g27 at 21.551 kb on + strand, within HP15_p187g27 at 21.606 kb on + strand, within HP15_p187g27 at 21.626 kb on + strand, within HP15_p187g27 at 21.626 kb on + strand, within HP15_p187g27 at 21.646 kb on + strand at 21.646 kb on + strand at 21.646 kb on + strand at 21.664 kb on - strand at 21.690 kb on + strand at 21.698 kb on - strand at 21.713 kb on + strand at 21.713 kb on + strand at 21.721 kb on - strand at 21.731 kb on - strand at 21.758 kb on + strand at 21.829 kb on - strand, within HP15_p187g28 at 21.829 kb on - strand, within HP15_p187g28 at 21.847 kb on + strand, within HP15_p187g28 at 21.847 kb on + strand, within HP15_p187g28 at 21.847 kb on + strand, within HP15_p187g28 at 21.855 kb on - strand, within HP15_p187g28 at 21.866 kb on - strand, within HP15_p187g28 at 21.928 kb on + strand at 21.928 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 3 remove 19,645 + -0.3 19,645 + -1.5 19,645 + -0.5 19,653 - +1.1 19,653 - +0.4 19,653 - +0.5 19,757 + -0.4 19,765 - +0.1 19,809 + HP15_p187g22 0.21 -0.5 19,882 + HP15_p187g22 0.80 -0.2 19,883 + HP15_p187g22 0.81 -0.2 19,884 + HP15_p187g22 0.82 -0.3 19,888 + HP15_p187g22 0.85 +0.2 19,890 + HP15_p187g22 0.87 -0.3 19,900 + +0.5 19,900 + -0.2 19,907 + -0.6 19,915 - -0.2 19,917 + +1.3 19,942 + +0.6 19,972 - -0.2 19,990 + -1.1 19,995 + -2.9 20,003 - +0.4 20,019 + -0.3 20,022 - -0.0 20,116 + +0.9 20,150 + +0.2 20,183 + HP15_p187g23 0.21 +0.4 20,206 + HP15_p187g23 0.36 -0.2 20,260 - HP15_p187g23 0.71 +0.3 20,274 - HP15_p187g23 0.80 -0.7 20,400 + HP15_p187g24 0.61 +1.3 20,408 - HP15_p187g24 0.66 -0.4 20,444 + HP15_p187g24 0.85 +0.6 20,505 - +0.7 20,585 - +0.0 20,624 - +0.1 20,770 + HP15_p187g25 0.47 +0.6 20,770 + HP15_p187g25 0.47 -0.2 20,825 + HP15_p187g25 0.65 -2.1 20,862 + HP15_p187g25 0.77 -0.7 20,948 - +0.8 21,025 - -1.0 21,026 + +0.9 21,051 + +0.4 21,141 + +0.7 21,172 + -0.3 21,175 - -1.0 21,180 - +0.3 21,196 - +0.5 21,263 - HP15_p187g26 0.33 +0.2 21,265 + HP15_p187g26 0.35 -1.7 21,293 + HP15_p187g26 0.52 -0.2 21,311 - HP15_p187g26 0.63 -1.1 21,351 + HP15_p187g26 0.88 -0.6 21,356 + -0.9 21,364 - -0.2 21,382 - -2.3 21,431 - +0.5 21,518 - HP15_p187g27 0.14 -0.5 21,551 + HP15_p187g27 0.33 -0.1 21,606 + HP15_p187g27 0.66 -0.3 21,626 + HP15_p187g27 0.78 -1.0 21,626 + HP15_p187g27 0.78 -0.3 21,646 + -2.2 21,646 + +0.7 21,646 + +0.7 21,664 - +1.0 21,690 + +0.0 21,698 - +0.2 21,713 + +0.4 21,713 + -0.0 21,721 - +1.3 21,731 - -0.1 21,758 + +0.6 21,829 - HP15_p187g28 0.27 -2.2 21,829 - HP15_p187g28 0.27 -0.4 21,847 + HP15_p187g28 0.40 +0.7 21,847 + HP15_p187g28 0.40 -0.2 21,847 + HP15_p187g28 0.40 +0.6 21,855 - HP15_p187g28 0.46 +1.3 21,866 - HP15_p187g28 0.54 +0.6 21,928 + +1.3 21,928 + +0.7
Or see this region's nucleotide sequence