Experiment: monoculture; Experiment B, time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_p42g23 and HP15_p42g24 overlap by 4 nucleotides HP15_p42g24 and HP15_p42g25 are separated by 18 nucleotides HP15_p42g25 and HP15_p42g26 are separated by 5 nucleotides HP15_p42g26 and HP15_p42g27 are separated by 3 nucleotides
HP15_p42g23: HP15_p42g23 - TRAG family protein, at 17,183 to 19,090
_p42g23
HP15_p42g24: HP15_p42g24 - peptidase S26C, conjugative transfer signal peptidase TraF, at 19,087 to 19,623
_p42g24
HP15_p42g25: HP15_p42g25 - DNA topoisomerase III, at 19,642 to 21,702
_p42g25
HP15_p42g26: HP15_p42g26 - conjugal transfer, TraD, beta/gamma-type, at 21,708 to 21,950
_p42g26
HP15_p42g27: HP15_p42g27 - TraC DNA primase, at 21,954 to 25,115
_p42g27
Position (kb) 19
20
21
22 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 18.660 kb on + strand, within HP15_p42g23 at 18.680 kb on - strand, within HP15_p42g23 at 18.854 kb on + strand, within HP15_p42g23 at 18.869 kb on - strand, within HP15_p42g23 at 18.992 kb on - strand at 19.046 kb on - strand at 19.065 kb on + strand at 19.169 kb on - strand, within HP15_p42g24 at 19.179 kb on - strand, within HP15_p42g24 at 19.220 kb on - strand, within HP15_p42g24 at 19.223 kb on - strand, within HP15_p42g24 at 19.268 kb on - strand, within HP15_p42g24 at 19.268 kb on - strand, within HP15_p42g24 at 19.292 kb on + strand, within HP15_p42g24 at 19.294 kb on + strand, within HP15_p42g24 at 19.300 kb on - strand, within HP15_p42g24 at 19.300 kb on - strand, within HP15_p42g24 at 19.302 kb on - strand, within HP15_p42g24 at 19.388 kb on + strand, within HP15_p42g24 at 19.434 kb on + strand, within HP15_p42g24 at 19.434 kb on + strand, within HP15_p42g24 at 19.451 kb on - strand, within HP15_p42g24 at 19.451 kb on - strand, within HP15_p42g24 at 19.451 kb on - strand, within HP15_p42g24 at 19.464 kb on - strand, within HP15_p42g24 at 19.501 kb on - strand, within HP15_p42g24 at 19.503 kb on + strand, within HP15_p42g24 at 19.508 kb on + strand, within HP15_p42g24 at 19.508 kb on + strand, within HP15_p42g24 at 19.508 kb on + strand, within HP15_p42g24 at 19.526 kb on + strand, within HP15_p42g24 at 19.570 kb on - strand at 19.577 kb on + strand at 19.636 kb on - strand at 19.694 kb on + strand at 19.695 kb on - strand at 19.713 kb on + strand at 19.713 kb on + strand at 19.729 kb on + strand at 19.794 kb on + strand at 19.797 kb on - strand at 19.807 kb on - strand at 19.807 kb on - strand at 19.901 kb on - strand, within HP15_p42g25 at 19.932 kb on + strand, within HP15_p42g25 at 19.940 kb on - strand, within HP15_p42g25 at 19.988 kb on - strand, within HP15_p42g25 at 20.131 kb on + strand, within HP15_p42g25 at 20.131 kb on + strand, within HP15_p42g25 at 20.137 kb on - strand, within HP15_p42g25 at 20.139 kb on - strand, within HP15_p42g25 at 20.139 kb on - strand, within HP15_p42g25 at 20.148 kb on + strand, within HP15_p42g25 at 20.165 kb on + strand, within HP15_p42g25 at 20.165 kb on + strand, within HP15_p42g25 at 20.165 kb on + strand, within HP15_p42g25 at 20.191 kb on - strand, within HP15_p42g25 at 20.218 kb on - strand, within HP15_p42g25 at 20.218 kb on - strand, within HP15_p42g25 at 20.218 kb on - strand, within HP15_p42g25 at 20.218 kb on - strand, within HP15_p42g25 at 20.246 kb on + strand, within HP15_p42g25 at 20.246 kb on + strand, within HP15_p42g25 at 20.246 kb on + strand, within HP15_p42g25 at 20.246 kb on + strand, within HP15_p42g25 at 20.246 kb on + strand, within HP15_p42g25 at 20.246 kb on + strand, within HP15_p42g25 at 20.246 kb on + strand, within HP15_p42g25 at 20.246 kb on + strand, within HP15_p42g25 at 20.246 kb on + strand, within HP15_p42g25 at 20.246 kb on + strand, within HP15_p42g25 at 20.246 kb on + strand, within HP15_p42g25 at 20.254 kb on - strand, within HP15_p42g25 at 20.254 kb on - strand, within HP15_p42g25 at 20.254 kb on - strand, within HP15_p42g25 at 20.254 kb on - strand, within HP15_p42g25 at 20.254 kb on - strand, within HP15_p42g25 at 20.266 kb on - strand, within HP15_p42g25 at 20.292 kb on + strand, within HP15_p42g25 at 20.400 kb on + strand, within HP15_p42g25 at 20.405 kb on + strand, within HP15_p42g25 at 20.407 kb on + strand, within HP15_p42g25 at 20.413 kb on - strand, within HP15_p42g25 at 20.415 kb on - strand, within HP15_p42g25 at 20.464 kb on - strand, within HP15_p42g25 at 20.465 kb on - strand, within HP15_p42g25 at 20.513 kb on + strand, within HP15_p42g25 at 20.513 kb on + strand, within HP15_p42g25 at 20.521 kb on - strand, within HP15_p42g25 at 20.521 kb on - strand, within HP15_p42g25 at 20.578 kb on + strand, within HP15_p42g25 at 20.578 kb on + strand, within HP15_p42g25 at 20.606 kb on + strand, within HP15_p42g25 at 20.611 kb on + strand, within HP15_p42g25 at 20.670 kb on + strand, within HP15_p42g25 at 20.680 kb on - strand, within HP15_p42g25 at 20.705 kb on + strand, within HP15_p42g25 at 20.706 kb on - strand, within HP15_p42g25 at 20.714 kb on - strand, within HP15_p42g25 at 20.768 kb on + strand, within HP15_p42g25 at 20.879 kb on - strand, within HP15_p42g25 at 20.886 kb on + strand, within HP15_p42g25 at 20.886 kb on + strand, within HP15_p42g25 at 20.894 kb on - strand, within HP15_p42g25 at 20.904 kb on - strand, within HP15_p42g25 at 20.904 kb on - strand, within HP15_p42g25 at 20.938 kb on + strand, within HP15_p42g25 at 20.940 kb on - strand, within HP15_p42g25 at 20.989 kb on + strand, within HP15_p42g25 at 20.990 kb on + strand, within HP15_p42g25 at 21.013 kb on - strand, within HP15_p42g25 at 21.013 kb on - strand, within HP15_p42g25 at 21.013 kb on - strand, within HP15_p42g25 at 21.025 kb on + strand, within HP15_p42g25 at 21.059 kb on - strand, within HP15_p42g25 at 21.150 kb on - strand, within HP15_p42g25 at 21.159 kb on + strand, within HP15_p42g25 at 21.167 kb on - strand, within HP15_p42g25 at 21.192 kb on + strand, within HP15_p42g25 at 21.207 kb on + strand, within HP15_p42g25 at 21.293 kb on - strand, within HP15_p42g25 at 21.293 kb on - strand, within HP15_p42g25 at 21.293 kb on - strand, within HP15_p42g25 at 21.313 kb on + strand, within HP15_p42g25 at 21.316 kb on - strand, within HP15_p42g25 at 21.318 kb on + strand, within HP15_p42g25 at 21.321 kb on - strand, within HP15_p42g25 at 21.330 kb on + strand, within HP15_p42g25 at 21.342 kb on + strand, within HP15_p42g25 at 21.342 kb on + strand, within HP15_p42g25 at 21.342 kb on + strand, within HP15_p42g25 at 21.398 kb on + strand, within HP15_p42g25 at 21.406 kb on - strand, within HP15_p42g25 at 21.416 kb on - strand, within HP15_p42g25 at 21.542 kb on - strand at 21.552 kb on - strand at 21.554 kb on + strand at 21.559 kb on + strand at 21.567 kb on - strand at 21.567 kb on - strand at 21.639 kb on - strand at 21.649 kb on + strand at 21.657 kb on - strand at 21.657 kb on - strand at 21.659 kb on + strand at 21.697 kb on + strand at 21.705 kb on - strand at 21.705 kb on - strand at 21.730 kb on + strand at 21.730 kb on + strand at 21.738 kb on - strand, within HP15_p42g26 at 21.738 kb on - strand, within HP15_p42g26 at 21.766 kb on - strand, within HP15_p42g26 at 21.774 kb on + strand, within HP15_p42g26 at 21.847 kb on + strand, within HP15_p42g26 at 21.847 kb on - strand, within HP15_p42g26 at 21.855 kb on - strand, within HP15_p42g26 at 21.899 kb on - strand, within HP15_p42g26 at 21.924 kb on + strand, within HP15_p42g26 at 21.924 kb on + strand, within HP15_p42g26 at 21.944 kb on + strand at 22.022 kb on + strand at 22.121 kb on + strand at 22.121 kb on + strand at 22.121 kb on + strand at 22.128 kb on + strand at 22.213 kb on + strand at 22.242 kb on + strand at 22.265 kb on + strand at 22.265 kb on + strand at 22.265 kb on + strand at 22.273 kb on - strand, within HP15_p42g27 at 22.275 kb on + strand, within HP15_p42g27 at 22.283 kb on - strand, within HP15_p42g27 at 22.297 kb on - strand, within HP15_p42g27 at 22.297 kb on - strand, within HP15_p42g27 at 22.334 kb on - strand, within HP15_p42g27 at 22.372 kb on + strand, within HP15_p42g27 at 22.381 kb on + strand, within HP15_p42g27 at 22.427 kb on - strand, within HP15_p42g27 at 22.434 kb on - strand, within HP15_p42g27 at 22.434 kb on - strand, within HP15_p42g27 at 22.445 kb on + strand, within HP15_p42g27 at 22.510 kb on + strand, within HP15_p42g27 at 22.518 kb on - strand, within HP15_p42g27 at 22.543 kb on - strand, within HP15_p42g27 at 22.553 kb on + strand, within HP15_p42g27 at 22.584 kb on - strand, within HP15_p42g27 at 22.617 kb on + strand, within HP15_p42g27 at 22.622 kb on + strand, within HP15_p42g27 at 22.625 kb on - strand, within HP15_p42g27 at 22.661 kb on + strand, within HP15_p42g27 at 22.661 kb on + strand, within HP15_p42g27 at 22.661 kb on + strand, within HP15_p42g27 at 22.661 kb on + strand, within HP15_p42g27 at 22.661 kb on + strand, within HP15_p42g27 at 22.668 kb on - strand, within HP15_p42g27 at 22.669 kb on - strand, within HP15_p42g27 at 22.669 kb on - strand, within HP15_p42g27 at 22.669 kb on - strand, within HP15_p42g27 at 22.669 kb on - strand, within HP15_p42g27
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 3 remove 18,660 + HP15_p42g23 0.77 -0.2 18,680 - HP15_p42g23 0.78 +0.9 18,854 + HP15_p42g23 0.88 +0.7 18,869 - HP15_p42g23 0.88 +0.0 18,992 - +0.3 19,046 - -1.6 19,065 + -0.5 19,169 - HP15_p42g24 0.15 +0.3 19,179 - HP15_p42g24 0.17 +0.0 19,220 - HP15_p42g24 0.25 +1.6 19,223 - HP15_p42g24 0.25 +2.0 19,268 - HP15_p42g24 0.34 +0.4 19,268 - HP15_p42g24 0.34 +0.2 19,292 + HP15_p42g24 0.38 -0.1 19,294 + HP15_p42g24 0.39 +0.1 19,300 - HP15_p42g24 0.40 -0.8 19,300 - HP15_p42g24 0.40 -2.0 19,302 - HP15_p42g24 0.40 -1.6 19,388 + HP15_p42g24 0.56 -0.7 19,434 + HP15_p42g24 0.65 -3.2 19,434 + HP15_p42g24 0.65 +0.4 19,451 - HP15_p42g24 0.68 -1.6 19,451 - HP15_p42g24 0.68 +0.0 19,451 - HP15_p42g24 0.68 +0.8 19,464 - HP15_p42g24 0.70 +0.5 19,501 - HP15_p42g24 0.77 -0.1 19,503 + HP15_p42g24 0.77 -0.8 19,508 + HP15_p42g24 0.78 +0.3 19,508 + HP15_p42g24 0.78 -1.7 19,508 + HP15_p42g24 0.78 -0.6 19,526 + HP15_p42g24 0.82 -2.9 19,570 - -0.3 19,577 + -1.8 19,636 - -0.1 19,694 + -0.9 19,695 - -0.8 19,713 + +0.2 19,713 + -0.4 19,729 + -0.1 19,794 + -0.5 19,797 - -0.2 19,807 - -0.5 19,807 - -0.2 19,901 - HP15_p42g25 0.13 -0.2 19,932 + HP15_p42g25 0.14 +0.4 19,940 - HP15_p42g25 0.14 -1.0 19,988 - HP15_p42g25 0.17 -0.9 20,131 + HP15_p42g25 0.24 -1.6 20,131 + HP15_p42g25 0.24 +1.0 20,137 - HP15_p42g25 0.24 -0.5 20,139 - HP15_p42g25 0.24 +1.0 20,139 - HP15_p42g25 0.24 -0.0 20,148 + HP15_p42g25 0.25 +0.5 20,165 + HP15_p42g25 0.25 +0.4 20,165 + HP15_p42g25 0.25 +0.1 20,165 + HP15_p42g25 0.25 -0.0 20,191 - HP15_p42g25 0.27 -1.3 20,218 - HP15_p42g25 0.28 -0.5 20,218 - HP15_p42g25 0.28 -0.1 20,218 - HP15_p42g25 0.28 +0.7 20,218 - HP15_p42g25 0.28 -0.2 20,246 + HP15_p42g25 0.29 -1.2 20,246 + HP15_p42g25 0.29 -1.4 20,246 + HP15_p42g25 0.29 +0.0 20,246 + HP15_p42g25 0.29 +0.1 20,246 + HP15_p42g25 0.29 -1.0 20,246 + HP15_p42g25 0.29 +0.3 20,246 + HP15_p42g25 0.29 +1.0 20,246 + HP15_p42g25 0.29 -2.0 20,246 + HP15_p42g25 0.29 +0.0 20,246 + HP15_p42g25 0.29 -0.6 20,246 + HP15_p42g25 0.29 -0.3 20,254 - HP15_p42g25 0.30 -0.7 20,254 - HP15_p42g25 0.30 -0.6 20,254 - HP15_p42g25 0.30 -0.4 20,254 - HP15_p42g25 0.30 -1.0 20,254 - HP15_p42g25 0.30 -0.7 20,266 - HP15_p42g25 0.30 +0.0 20,292 + HP15_p42g25 0.32 -0.3 20,400 + HP15_p42g25 0.37 -0.8 20,405 + HP15_p42g25 0.37 +0.6 20,407 + HP15_p42g25 0.37 -1.3 20,413 - HP15_p42g25 0.37 -0.3 20,415 - HP15_p42g25 0.38 +0.6 20,464 - HP15_p42g25 0.40 +1.6 20,465 - HP15_p42g25 0.40 -0.4 20,513 + HP15_p42g25 0.42 +1.1 20,513 + HP15_p42g25 0.42 -0.5 20,521 - HP15_p42g25 0.43 -0.4 20,521 - HP15_p42g25 0.43 +0.3 20,578 + HP15_p42g25 0.45 -1.0 20,578 + HP15_p42g25 0.45 -0.6 20,606 + HP15_p42g25 0.47 -0.5 20,611 + HP15_p42g25 0.47 -0.9 20,670 + HP15_p42g25 0.50 -0.4 20,680 - HP15_p42g25 0.50 -0.2 20,705 + HP15_p42g25 0.52 +0.7 20,706 - HP15_p42g25 0.52 +0.9 20,714 - HP15_p42g25 0.52 -1.0 20,768 + HP15_p42g25 0.55 +0.4 20,879 - HP15_p42g25 0.60 -0.0 20,886 + HP15_p42g25 0.60 +0.5 20,886 + HP15_p42g25 0.60 +0.4 20,894 - HP15_p42g25 0.61 -0.4 20,904 - HP15_p42g25 0.61 -2.0 20,904 - HP15_p42g25 0.61 +0.7 20,938 + HP15_p42g25 0.63 -0.3 20,940 - HP15_p42g25 0.63 -0.1 20,989 + HP15_p42g25 0.65 +1.0 20,990 + HP15_p42g25 0.65 -0.8 21,013 - HP15_p42g25 0.67 +0.2 21,013 - HP15_p42g25 0.67 +0.6 21,013 - HP15_p42g25 0.67 -0.6 21,025 + HP15_p42g25 0.67 +0.3 21,059 - HP15_p42g25 0.69 +0.4 21,150 - HP15_p42g25 0.73 +1.1 21,159 + HP15_p42g25 0.74 -1.2 21,167 - HP15_p42g25 0.74 +0.7 21,192 + HP15_p42g25 0.75 -0.4 21,207 + HP15_p42g25 0.76 +0.1 21,293 - HP15_p42g25 0.80 -0.2 21,293 - HP15_p42g25 0.80 +0.8 21,293 - HP15_p42g25 0.80 +1.3 21,313 + HP15_p42g25 0.81 -1.5 21,316 - HP15_p42g25 0.81 -0.9 21,318 + HP15_p42g25 0.81 -0.6 21,321 - HP15_p42g25 0.81 -1.9 21,330 + HP15_p42g25 0.82 -0.4 21,342 + HP15_p42g25 0.82 -1.6 21,342 + HP15_p42g25 0.82 -2.0 21,342 + HP15_p42g25 0.82 +0.3 21,398 + HP15_p42g25 0.85 -0.0 21,406 - HP15_p42g25 0.86 -1.1 21,416 - HP15_p42g25 0.86 +0.2 21,542 - -0.8 21,552 - +1.4 21,554 + -1.0 21,559 + -0.9 21,567 - +0.0 21,567 - +0.8 21,639 - -0.1 21,649 + -0.1 21,657 - +0.2 21,657 - -0.4 21,659 + +0.2 21,697 + -0.2 21,705 - -0.7 21,705 - -0.6 21,730 + -0.6 21,730 + -0.5 21,738 - HP15_p42g26 0.12 +0.9 21,738 - HP15_p42g26 0.12 +1.0 21,766 - HP15_p42g26 0.24 +0.0 21,774 + HP15_p42g26 0.27 -1.7 21,847 + HP15_p42g26 0.57 -1.0 21,847 - HP15_p42g26 0.57 +2.7 21,855 - HP15_p42g26 0.60 -0.9 21,899 - HP15_p42g26 0.79 +0.3 21,924 + HP15_p42g26 0.89 -0.6 21,924 + HP15_p42g26 0.89 +1.0 21,944 + +0.9 22,022 + -1.3 22,121 + +0.2 22,121 + +0.3 22,121 + +0.3 22,128 + +0.4 22,213 + -0.7 22,242 + -0.1 22,265 + +1.3 22,265 + -0.8 22,265 + -1.5 22,273 - HP15_p42g27 0.10 -0.9 22,275 + HP15_p42g27 0.10 -0.9 22,283 - HP15_p42g27 0.10 +0.7 22,297 - HP15_p42g27 0.11 -0.6 22,297 - HP15_p42g27 0.11 +0.1 22,334 - HP15_p42g27 0.12 -3.0 22,372 + HP15_p42g27 0.13 -0.7 22,381 + HP15_p42g27 0.14 -0.1 22,427 - HP15_p42g27 0.15 +1.5 22,434 - HP15_p42g27 0.15 -0.7 22,434 - HP15_p42g27 0.15 +1.2 22,445 + HP15_p42g27 0.16 -0.0 22,510 + HP15_p42g27 0.18 -1.1 22,518 - HP15_p42g27 0.18 -0.1 22,543 - HP15_p42g27 0.19 -2.2 22,553 + HP15_p42g27 0.19 -2.9 22,584 - HP15_p42g27 0.20 +0.6 22,617 + HP15_p42g27 0.21 +0.1 22,622 + HP15_p42g27 0.21 +0.1 22,625 - HP15_p42g27 0.21 +0.5 22,661 + HP15_p42g27 0.22 -0.1 22,661 + HP15_p42g27 0.22 +0.3 22,661 + HP15_p42g27 0.22 +0.2 22,661 + HP15_p42g27 0.22 -0.0 22,661 + HP15_p42g27 0.22 +0.3 22,668 - HP15_p42g27 0.23 +0.3 22,669 - HP15_p42g27 0.23 +2.0 22,669 - HP15_p42g27 0.23 -0.4 22,669 - HP15_p42g27 0.23 +0.6 22,669 - HP15_p42g27 0.23 -0.1
Or see this region's nucleotide sequence