Experiment: monoculture; Experiment B, time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2772 and HP15_2773 are separated by 14 nucleotides HP15_2773 and HP15_2774 are separated by 20 nucleotides HP15_2774 and HP15_2775 are separated by 57 nucleotides
HP15_2772: HP15_2772 - N-isopropylammelide isopropylaminohydrolase, at 2,925,066 to 2,926,310
_2772
HP15_2773: HP15_2773 - conserved hypothetical protein, membrane, at 2,926,325 to 2,926,780
_2773
HP15_2774: HP15_2774 - DSBA oxidoreductase, at 2,926,801 to 2,927,448
_2774
HP15_2775: HP15_2775 - transcriptional regulator protein, LysR family, at 2,927,506 to 2,928,399
_2775
Position (kb)
2926
2927 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2925.398 kb on + strand, within HP15_2772 at 2925.423 kb on + strand, within HP15_2772 at 2925.431 kb on - strand, within HP15_2772 at 2925.460 kb on + strand, within HP15_2772 at 2925.580 kb on + strand, within HP15_2772 at 2925.616 kb on - strand, within HP15_2772 at 2925.623 kb on + strand, within HP15_2772 at 2925.631 kb on - strand, within HP15_2772 at 2925.691 kb on - strand, within HP15_2772 at 2925.787 kb on + strand, within HP15_2772 at 2926.035 kb on + strand, within HP15_2772 at 2926.074 kb on - strand, within HP15_2772 at 2926.146 kb on - strand, within HP15_2772 at 2926.146 kb on - strand, within HP15_2772 at 2926.241 kb on - strand at 2926.285 kb on - strand at 2926.305 kb on - strand at 2926.316 kb on + strand at 2926.474 kb on - strand, within HP15_2773 at 2926.493 kb on + strand, within HP15_2773 at 2926.499 kb on + strand, within HP15_2773 at 2926.621 kb on + strand, within HP15_2773 at 2926.724 kb on + strand, within HP15_2773 at 2926.802 kb on + strand at 2926.872 kb on + strand, within HP15_2774 at 2926.913 kb on - strand, within HP15_2774 at 2926.988 kb on - strand, within HP15_2774 at 2927.015 kb on + strand, within HP15_2774 at 2927.028 kb on - strand, within HP15_2774 at 2927.107 kb on - strand, within HP15_2774 at 2927.107 kb on - strand, within HP15_2774 at 2927.109 kb on + strand, within HP15_2774 at 2927.241 kb on - strand, within HP15_2774 at 2927.281 kb on + strand, within HP15_2774 at 2927.301 kb on + strand, within HP15_2774 at 2927.313 kb on + strand, within HP15_2774 at 2927.363 kb on + strand, within HP15_2774 at 2927.488 kb on + strand at 2927.546 kb on - strand at 2927.556 kb on - strand at 2927.654 kb on - strand, within HP15_2775 at 2927.735 kb on - strand, within HP15_2775 at 2927.735 kb on - strand, within HP15_2775
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 3 remove 2,925,398 + HP15_2772 0.27 +0.9 2,925,423 + HP15_2772 0.29 -0.2 2,925,431 - HP15_2772 0.29 -1.1 2,925,460 + HP15_2772 0.32 -2.0 2,925,580 + HP15_2772 0.41 +0.8 2,925,616 - HP15_2772 0.44 +1.2 2,925,623 + HP15_2772 0.45 +1.1 2,925,631 - HP15_2772 0.45 -0.5 2,925,691 - HP15_2772 0.50 +0.5 2,925,787 + HP15_2772 0.58 +1.7 2,926,035 + HP15_2772 0.78 +0.2 2,926,074 - HP15_2772 0.81 +0.1 2,926,146 - HP15_2772 0.87 -0.2 2,926,146 - HP15_2772 0.87 -0.8 2,926,241 - -1.7 2,926,285 - +0.7 2,926,305 - -0.5 2,926,316 + +0.5 2,926,474 - HP15_2773 0.33 -0.1 2,926,493 + HP15_2773 0.37 -0.5 2,926,499 + HP15_2773 0.38 -0.3 2,926,621 + HP15_2773 0.65 -2.6 2,926,724 + HP15_2773 0.88 -0.3 2,926,802 + +1.0 2,926,872 + HP15_2774 0.11 +1.1 2,926,913 - HP15_2774 0.17 +1.0 2,926,988 - HP15_2774 0.29 +0.1 2,927,015 + HP15_2774 0.33 +0.4 2,927,028 - HP15_2774 0.35 +0.6 2,927,107 - HP15_2774 0.47 -1.0 2,927,107 - HP15_2774 0.47 +1.2 2,927,109 + HP15_2774 0.48 +0.1 2,927,241 - HP15_2774 0.68 +2.2 2,927,281 + HP15_2774 0.74 +2.5 2,927,301 + HP15_2774 0.77 -0.7 2,927,313 + HP15_2774 0.79 -0.0 2,927,363 + HP15_2774 0.87 +0.0 2,927,488 + +0.5 2,927,546 - +1.4 2,927,556 - -0.1 2,927,654 - HP15_2775 0.17 -1.4 2,927,735 - HP15_2775 0.26 -0.5 2,927,735 - HP15_2775 0.26 -0.7
Or see this region's nucleotide sequence