Experiment: monoculture; Experiment B, time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2468 and HP15_2469 overlap by 23 nucleotides HP15_2469 and HP15_2470 overlap by 4 nucleotides HP15_2470 and HP15_2471 overlap by 11 nucleotides HP15_2471 and HP15_2472 are separated by 13 nucleotides HP15_2472 and HP15_2473 are separated by 845 nucleotides
HP15_2468: HP15_2468 - metalloprotease YbeY, at 2,608,711 to 2,609,058
_2468
HP15_2469: HP15_2469 - predicted metal-dependent hydrolase, at 2,609,036 to 2,609,170
_2469
HP15_2470: HP15_2470 - metal ion transporter, at 2,609,167 to 2,610,012
_2470
HP15_2471: HP15_2471 - apolipoprotein N-acyltransferase, at 2,610,002 to 2,611,564
_2471
HP15_2472: HP15_2472 - hypothetical protein, at 2,611,578 to 2,611,685
_2472
HP15_2473: HP15_2473 - leucyl-tRNA synthetase, at 2,612,531 to 2,615,116
_2473
Position (kb)
2610
2611
2612 Strain fitness (log2 ratio)
-1
0
1
2 at 2609.119 kb on + strand, within HP15_2469 at 2609.156 kb on + strand, within HP15_2469 at 2609.449 kb on + strand, within HP15_2470 at 2609.685 kb on - strand, within HP15_2470 at 2609.706 kb on - strand, within HP15_2470 at 2609.726 kb on - strand, within HP15_2470 at 2611.609 kb on - strand, within HP15_2472 at 2611.619 kb on + strand, within HP15_2472 at 2611.692 kb on - strand at 2611.697 kb on - strand at 2612.060 kb on + strand at 2612.147 kb on + strand at 2612.194 kb on - strand at 2612.280 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 3 remove 2,609,119 + HP15_2469 0.61 -0.5 2,609,156 + HP15_2469 0.89 +1.1 2,609,449 + HP15_2470 0.33 -1.1 2,609,685 - HP15_2470 0.61 +0.7 2,609,706 - HP15_2470 0.64 -1.5 2,609,726 - HP15_2470 0.66 -1.0 2,611,609 - HP15_2472 0.29 +1.0 2,611,619 + HP15_2472 0.38 +1.6 2,611,692 - -0.3 2,611,697 - +0.6 2,612,060 + +0.6 2,612,147 + +2.6 2,612,194 - +0.1 2,612,280 - -0.2
Or see this region's nucleotide sequence