Experiment: monoculture; Experiment B, time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2215 and HP15_2216 are separated by 43 nucleotides HP15_2216 and HP15_2217 are separated by 100 nucleotides HP15_2217 and HP15_2218 are separated by 138 nucleotides HP15_2218 and HP15_2219 are separated by 4 nucleotides
HP15_2215: HP15_2215 - fatty acid/phospholipid synthesis protein PlsX, at 2,332,684 to 2,333,685
_2215
HP15_2216: HP15_2216 - ribosomal protein L32p, at 2,333,729 to 2,333,908
_2216
HP15_2217: HP15_2217 - protein containing DUF177, at 2,334,009 to 2,334,563
_2217
HP15_2218: HP15_2218 - Maf-like protein, at 2,334,702 to 2,335,310
_2218
HP15_2219: HP15_2219 - family S49 unassigned peptidase, at 2,335,315 to 2,336,358
_2219
Position (kb)
2334
2335 Strain fitness (log2 ratio)
-1
0
1 at 2333.718 kb on - strand at 2334.605 kb on - strand at 2334.625 kb on + strand at 2334.818 kb on + strand, within HP15_2218 at 2334.925 kb on - strand, within HP15_2218 at 2334.950 kb on - strand, within HP15_2218 at 2334.950 kb on - strand, within HP15_2218 at 2334.950 kb on - strand, within HP15_2218 at 2334.950 kb on - strand, within HP15_2218 at 2335.000 kb on + strand, within HP15_2218 at 2335.006 kb on + strand, within HP15_2218 at 2335.016 kb on - strand, within HP15_2218 at 2335.180 kb on + strand, within HP15_2218 at 2335.180 kb on + strand, within HP15_2218 at 2335.180 kb on + strand, within HP15_2218 at 2335.190 kb on + strand, within HP15_2218 at 2335.212 kb on + strand, within HP15_2218 at 2335.417 kb on + strand at 2335.425 kb on + strand, within HP15_2219 at 2335.450 kb on - strand, within HP15_2219 at 2335.462 kb on + strand, within HP15_2219 at 2335.480 kb on - strand, within HP15_2219 at 2335.525 kb on - strand, within HP15_2219
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 3 remove 2,333,718 - -1.2 2,334,605 - +0.5 2,334,625 + -0.1 2,334,818 + HP15_2218 0.19 +0.4 2,334,925 - HP15_2218 0.37 -1.5 2,334,950 - HP15_2218 0.41 -0.1 2,334,950 - HP15_2218 0.41 -1.0 2,334,950 - HP15_2218 0.41 -1.4 2,334,950 - HP15_2218 0.41 -0.7 2,335,000 + HP15_2218 0.49 -0.7 2,335,006 + HP15_2218 0.50 -0.3 2,335,016 - HP15_2218 0.52 -1.2 2,335,180 + HP15_2218 0.78 -1.1 2,335,180 + HP15_2218 0.78 -0.7 2,335,180 + HP15_2218 0.78 -0.5 2,335,190 + HP15_2218 0.80 -0.2 2,335,212 + HP15_2218 0.84 +0.2 2,335,417 + -0.3 2,335,425 + HP15_2219 0.11 +1.1 2,335,450 - HP15_2219 0.13 +0.4 2,335,462 + HP15_2219 0.14 -0.0 2,335,480 - HP15_2219 0.16 +0.1 2,335,525 - HP15_2219 0.20 -0.3
Or see this region's nucleotide sequence