Experiment: monoculture; Experiment B, time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2158 and HP15_2159 are separated by 117 nucleotides HP15_2159 and HP15_2160 overlap by 4 nucleotides HP15_2160 and HP15_2161 are separated by 11 nucleotides HP15_2161 and HP15_2162 are separated by 7 nucleotides HP15_2162 and HP15_2163 overlap by 1 nucleotides
HP15_2158: HP15_2158 - ABC-type sugar transport system, periplasmic component, at 2,265,504 to 2,267,246
_2158
HP15_2159: HP15_2159 - hypothetical protein, at 2,267,364 to 2,267,471
_2159
HP15_2160: HP15_2160 - transmembrane protein, at 2,267,468 to 2,267,743
_2160
HP15_2161: HP15_2161 - sugar ABC transporter, permease protein, at 2,267,755 to 2,268,564
_2161
HP15_2162: HP15_2162 - sugar ABC transporter, permease protein, at 2,268,572 to 2,269,438
_2162
HP15_2163: HP15_2163 - sugar ABC transporter, ATP-binding protein, at 2,269,438 to 2,270,538
_2163
Position (kb)
2267
2268
2269 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2266.814 kb on - strand, within HP15_2158 at 2266.838 kb on + strand, within HP15_2158 at 2267.089 kb on + strand at 2267.097 kb on - strand at 2267.119 kb on + strand at 2267.161 kb on + strand at 2267.210 kb on + strand at 2267.247 kb on + strand at 2267.571 kb on + strand, within HP15_2160 at 2267.640 kb on + strand, within HP15_2160 at 2267.695 kb on + strand, within HP15_2160 at 2267.764 kb on + strand at 2267.801 kb on + strand at 2267.877 kb on + strand, within HP15_2161 at 2267.954 kb on + strand, within HP15_2161 at 2268.119 kb on + strand, within HP15_2161 at 2268.272 kb on + strand, within HP15_2161 at 2268.399 kb on - strand, within HP15_2161 at 2268.438 kb on + strand, within HP15_2161 at 2268.438 kb on + strand, within HP15_2161 at 2268.438 kb on + strand, within HP15_2161 at 2268.438 kb on + strand, within HP15_2161 at 2268.446 kb on - strand, within HP15_2161 at 2268.446 kb on - strand, within HP15_2161 at 2268.751 kb on + strand, within HP15_2162 at 2268.819 kb on + strand, within HP15_2162 at 2268.916 kb on + strand, within HP15_2162 at 2268.916 kb on + strand, within HP15_2162 at 2268.921 kb on + strand, within HP15_2162 at 2268.929 kb on - strand, within HP15_2162 at 2269.010 kb on + strand, within HP15_2162 at 2269.018 kb on - strand, within HP15_2162 at 2269.177 kb on - strand, within HP15_2162 at 2269.182 kb on + strand, within HP15_2162 at 2269.276 kb on + strand, within HP15_2162 at 2269.280 kb on + strand, within HP15_2162 at 2269.312 kb on - strand, within HP15_2162 at 2269.421 kb on + strand at 2269.467 kb on - strand at 2269.516 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 3 remove 2,266,814 - HP15_2158 0.75 +0.5 2,266,838 + HP15_2158 0.77 -1.7 2,267,089 + +0.1 2,267,097 - -0.6 2,267,119 + +0.0 2,267,161 + -0.4 2,267,210 + -0.5 2,267,247 + -0.5 2,267,571 + HP15_2160 0.37 -1.3 2,267,640 + HP15_2160 0.62 -1.6 2,267,695 + HP15_2160 0.82 -0.4 2,267,764 + +0.5 2,267,801 + -0.4 2,267,877 + HP15_2161 0.15 +0.2 2,267,954 + HP15_2161 0.25 -0.1 2,268,119 + HP15_2161 0.45 +0.4 2,268,272 + HP15_2161 0.64 +1.4 2,268,399 - HP15_2161 0.80 +1.7 2,268,438 + HP15_2161 0.84 -1.3 2,268,438 + HP15_2161 0.84 -2.5 2,268,438 + HP15_2161 0.84 +0.5 2,268,438 + HP15_2161 0.84 +1.8 2,268,446 - HP15_2161 0.85 -0.8 2,268,446 - HP15_2161 0.85 -0.0 2,268,751 + HP15_2162 0.21 +2.0 2,268,819 + HP15_2162 0.28 +1.2 2,268,916 + HP15_2162 0.40 -0.9 2,268,916 + HP15_2162 0.40 +0.6 2,268,921 + HP15_2162 0.40 -0.5 2,268,929 - HP15_2162 0.41 -0.6 2,269,010 + HP15_2162 0.51 +0.1 2,269,018 - HP15_2162 0.51 +0.5 2,269,177 - HP15_2162 0.70 +0.7 2,269,182 + HP15_2162 0.70 +0.8 2,269,276 + HP15_2162 0.81 +0.3 2,269,280 + HP15_2162 0.82 -2.8 2,269,312 - HP15_2162 0.85 -0.7 2,269,421 + +1.0 2,269,467 - -1.5 2,269,516 - -0.7
Or see this region's nucleotide sequence