Experiment: monoculture; Experiment B, time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2141 and HP15_2142 are separated by 77 nucleotides HP15_2142 and HP15_2143 are separated by 31 nucleotides HP15_2143 and HP15_2144 are separated by 292 nucleotides HP15_2144 and HP15_2145 are separated by 11 nucleotides
HP15_2141: HP15_2141 - protein containing tetratricopeptide repeats, at 2,242,751 to 2,244,625
_2141
HP15_2142: HP15_2142 - conserved hypothetical protein, secreted, at 2,244,703 to 2,245,242
_2142
HP15_2143: HP15_2143 - conserved hypothetical protein, at 2,245,274 to 2,246,383
_2143
HP15_2144: HP15_2144 - redoxin domain protein, at 2,246,676 to 2,247,179
_2144
HP15_2145: HP15_2145 - conserved hypothetical protein, at 2,247,191 to 2,247,715
_2145
Position (kb)
2245
2246
2247 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2244.389 kb on - strand, within HP15_2141 at 2244.412 kb on + strand, within HP15_2141 at 2244.434 kb on - strand, within HP15_2141 at 2244.444 kb on - strand at 2244.444 kb on - strand at 2244.524 kb on + strand at 2244.576 kb on + strand at 2244.709 kb on - strand at 2244.951 kb on + strand, within HP15_2142 at 2244.952 kb on - strand, within HP15_2142 at 2245.091 kb on + strand, within HP15_2142 at 2245.121 kb on + strand, within HP15_2142 at 2245.129 kb on - strand, within HP15_2142 at 2245.139 kb on - strand, within HP15_2142 at 2245.166 kb on + strand, within HP15_2142 at 2245.201 kb on - strand at 2245.279 kb on + strand at 2245.463 kb on - strand, within HP15_2143 at 2245.485 kb on + strand, within HP15_2143 at 2245.491 kb on + strand, within HP15_2143 at 2245.517 kb on + strand, within HP15_2143 at 2245.517 kb on + strand, within HP15_2143 at 2245.600 kb on + strand, within HP15_2143 at 2245.626 kb on - strand, within HP15_2143 at 2245.626 kb on - strand, within HP15_2143 at 2245.626 kb on - strand, within HP15_2143 at 2245.650 kb on - strand, within HP15_2143 at 2245.850 kb on + strand, within HP15_2143 at 2245.857 kb on + strand, within HP15_2143 at 2246.058 kb on + strand, within HP15_2143 at 2246.158 kb on + strand, within HP15_2143 at 2246.178 kb on - strand, within HP15_2143 at 2246.217 kb on + strand, within HP15_2143 at 2246.217 kb on + strand, within HP15_2143 at 2246.230 kb on - strand, within HP15_2143 at 2246.257 kb on - strand, within HP15_2143 at 2246.404 kb on + strand at 2246.412 kb on - strand at 2246.793 kb on + strand, within HP15_2144 at 2246.925 kb on + strand, within HP15_2144 at 2247.127 kb on - strand, within HP15_2144 at 2247.127 kb on - strand, within HP15_2144 at 2247.208 kb on + strand at 2247.213 kb on + strand at 2247.213 kb on + strand at 2247.213 kb on + strand at 2247.221 kb on - strand at 2247.221 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 3 remove 2,244,389 - HP15_2141 0.87 -1.6 2,244,412 + HP15_2141 0.89 +0.7 2,244,434 - HP15_2141 0.90 -1.4 2,244,444 - -0.2 2,244,444 - +0.1 2,244,524 + +0.4 2,244,576 + -0.0 2,244,709 - -1.0 2,244,951 + HP15_2142 0.46 -1.2 2,244,952 - HP15_2142 0.46 +1.2 2,245,091 + HP15_2142 0.72 -0.3 2,245,121 + HP15_2142 0.77 +0.2 2,245,129 - HP15_2142 0.79 +0.5 2,245,139 - HP15_2142 0.81 -0.3 2,245,166 + HP15_2142 0.86 -0.2 2,245,201 - +0.3 2,245,279 + +1.9 2,245,463 - HP15_2143 0.17 +0.5 2,245,485 + HP15_2143 0.19 -1.8 2,245,491 + HP15_2143 0.20 -1.7 2,245,517 + HP15_2143 0.22 -1.2 2,245,517 + HP15_2143 0.22 -1.5 2,245,600 + HP15_2143 0.29 -0.6 2,245,626 - HP15_2143 0.32 -0.1 2,245,626 - HP15_2143 0.32 -0.6 2,245,626 - HP15_2143 0.32 -0.6 2,245,650 - HP15_2143 0.34 +0.4 2,245,850 + HP15_2143 0.52 +0.6 2,245,857 + HP15_2143 0.53 -2.2 2,246,058 + HP15_2143 0.71 +1.4 2,246,158 + HP15_2143 0.80 +0.8 2,246,178 - HP15_2143 0.81 +1.1 2,246,217 + HP15_2143 0.85 -1.1 2,246,217 + HP15_2143 0.85 -0.3 2,246,230 - HP15_2143 0.86 -0.5 2,246,257 - HP15_2143 0.89 -0.1 2,246,404 + +0.8 2,246,412 - -0.6 2,246,793 + HP15_2144 0.23 +0.4 2,246,925 + HP15_2144 0.49 +0.3 2,247,127 - HP15_2144 0.89 -0.7 2,247,127 - HP15_2144 0.89 -0.3 2,247,208 + +0.2 2,247,213 + -0.8 2,247,213 + +1.0 2,247,213 + +0.1 2,247,221 - +0.4 2,247,221 - +1.0
Or see this region's nucleotide sequence