Experiment: monoculture; Experiment B, time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2129 and HP15_2130 are separated by 8 nucleotides HP15_2130 and HP15_2131 are separated by 137 nucleotides HP15_2131 and HP15_2132 are separated by 9 nucleotides HP15_2132 and HP15_2133 are separated by 99 nucleotides
HP15_2129: HP15_2129 - ABC transporter ATP-binding protein-like protein, at 2,231,273 to 2,232,004
_2129
HP15_2130: HP15_2130 - transcriptional regulator, TraR/DksA family, at 2,232,013 to 2,232,333
_2130
HP15_2131: HP15_2131 - ATP-dependent protease HslVU (ClpYQ), ATPase subunit-like protein, at 2,232,471 to 2,232,809
_2131
HP15_2132: HP15_2132 - polyhydroxyalkanoic acid synthase, at 2,232,819 to 2,234,621
_2132
HP15_2133: HP15_2133 - solute symporter-like protein, at 2,234,721 to 2,236,085
_2133
Position (kb)
2232
2233
2234
2235 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2231.830 kb on - strand, within HP15_2129 at 2231.915 kb on + strand, within HP15_2129 at 2231.963 kb on + strand at 2232.016 kb on + strand at 2232.016 kb on + strand at 2232.018 kb on + strand at 2232.028 kb on - strand at 2232.080 kb on - strand, within HP15_2130 at 2232.107 kb on + strand, within HP15_2130 at 2232.394 kb on + strand at 2232.433 kb on - strand at 2232.473 kb on - strand at 2232.597 kb on - strand, within HP15_2131 at 2232.597 kb on - strand, within HP15_2131 at 2232.667 kb on - strand, within HP15_2131 at 2232.708 kb on + strand, within HP15_2131 at 2232.765 kb on + strand, within HP15_2131 at 2232.779 kb on + strand at 2232.780 kb on + strand at 2232.787 kb on - strand at 2232.787 kb on - strand at 2232.787 kb on - strand at 2232.819 kb on - strand at 2232.830 kb on + strand at 2232.950 kb on + strand at 2232.950 kb on + strand at 2233.067 kb on + strand, within HP15_2132 at 2233.215 kb on + strand, within HP15_2132 at 2233.251 kb on - strand, within HP15_2132 at 2233.287 kb on + strand, within HP15_2132 at 2233.287 kb on + strand, within HP15_2132 at 2233.348 kb on - strand, within HP15_2132 at 2233.605 kb on + strand, within HP15_2132 at 2233.606 kb on - strand, within HP15_2132 at 2233.838 kb on + strand, within HP15_2132 at 2233.921 kb on - strand, within HP15_2132 at 2234.007 kb on + strand, within HP15_2132 at 2234.015 kb on - strand, within HP15_2132 at 2234.149 kb on + strand, within HP15_2132 at 2234.208 kb on - strand, within HP15_2132 at 2234.221 kb on + strand, within HP15_2132 at 2234.269 kb on + strand, within HP15_2132 at 2234.315 kb on + strand, within HP15_2132 at 2234.443 kb on + strand at 2234.599 kb on - strand at 2234.616 kb on + strand at 2234.895 kb on - strand, within HP15_2133 at 2235.053 kb on + strand, within HP15_2133 at 2235.212 kb on + strand, within HP15_2133 at 2235.559 kb on + strand, within HP15_2133 at 2235.572 kb on - strand, within HP15_2133 at 2235.607 kb on - strand, within HP15_2133
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 3 remove 2,231,830 - HP15_2129 0.76 -1.2 2,231,915 + HP15_2129 0.88 -0.2 2,231,963 + +1.2 2,232,016 + +0.1 2,232,016 + -0.9 2,232,018 + +0.1 2,232,028 - -2.4 2,232,080 - HP15_2130 0.21 -0.3 2,232,107 + HP15_2130 0.29 +1.4 2,232,394 + +0.0 2,232,433 - -0.8 2,232,473 - -0.2 2,232,597 - HP15_2131 0.37 +0.6 2,232,597 - HP15_2131 0.37 -0.6 2,232,667 - HP15_2131 0.58 +0.7 2,232,708 + HP15_2131 0.70 +0.9 2,232,765 + HP15_2131 0.87 +1.2 2,232,779 + -1.1 2,232,780 + +0.1 2,232,787 - +0.1 2,232,787 - +1.9 2,232,787 - -0.5 2,232,819 - +0.3 2,232,830 + +1.1 2,232,950 + +1.2 2,232,950 + +1.0 2,233,067 + HP15_2132 0.14 +0.7 2,233,215 + HP15_2132 0.22 +1.1 2,233,251 - HP15_2132 0.24 -0.0 2,233,287 + HP15_2132 0.26 -1.8 2,233,287 + HP15_2132 0.26 -0.7 2,233,348 - HP15_2132 0.29 +0.2 2,233,605 + HP15_2132 0.44 +0.4 2,233,606 - HP15_2132 0.44 +1.3 2,233,838 + HP15_2132 0.57 +0.3 2,233,921 - HP15_2132 0.61 -0.0 2,234,007 + HP15_2132 0.66 -0.0 2,234,015 - HP15_2132 0.66 -1.3 2,234,149 + HP15_2132 0.74 +0.8 2,234,208 - HP15_2132 0.77 +1.6 2,234,221 + HP15_2132 0.78 +1.4 2,234,269 + HP15_2132 0.80 +0.5 2,234,315 + HP15_2132 0.83 +0.1 2,234,443 + +0.4 2,234,599 - +0.9 2,234,616 + +1.3 2,234,895 - HP15_2133 0.13 -0.0 2,235,053 + HP15_2133 0.24 +1.3 2,235,212 + HP15_2133 0.36 +0.5 2,235,559 + HP15_2133 0.61 -0.3 2,235,572 - HP15_2133 0.62 -1.4 2,235,607 - HP15_2133 0.65 +0.1
Or see this region's nucleotide sequence