Experiment: monoculture; Experiment B, time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1901 and HP15_1902 are separated by 57 nucleotides HP15_1902 and HP15_1903 are separated by 56 nucleotides HP15_1903 and HP15_1904 overlap by 1 nucleotides
HP15_1901: HP15_1901 - SAF domain protein, at 2,010,512 to 2,011,798
_1901
HP15_1902: HP15_1902 - glucose-1-phosphate cytidylyltransferase, at 2,011,856 to 2,012,608
_1902
HP15_1903: HP15_1903 - N-acetylglucosaminyl phosphatidylinositol deacetylase, at 2,012,665 to 2,013,273
_1903
HP15_1904: HP15_1904 - polysaccharide pyruvyl transferase, at 2,013,273 to 2,014,613
_1904
Position (kb)
2012
2013
2014 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2011.670 kb on + strand at 2011.762 kb on + strand at 2011.812 kb on + strand at 2012.002 kb on - strand, within HP15_1902 at 2012.164 kb on - strand, within HP15_1902 at 2012.340 kb on - strand, within HP15_1902 at 2012.357 kb on - strand, within HP15_1902 at 2012.360 kb on - strand, within HP15_1902 at 2012.444 kb on + strand, within HP15_1902 at 2012.555 kb on - strand at 2012.614 kb on + strand at 2012.614 kb on + strand at 2012.622 kb on - strand at 2012.638 kb on + strand at 2012.653 kb on - strand at 2012.702 kb on + strand at 2012.736 kb on - strand, within HP15_1903 at 2012.738 kb on + strand, within HP15_1903 at 2012.751 kb on - strand, within HP15_1903 at 2012.753 kb on + strand, within HP15_1903 at 2012.839 kb on - strand, within HP15_1903 at 2012.918 kb on - strand, within HP15_1903 at 2013.058 kb on + strand, within HP15_1903 at 2013.140 kb on + strand, within HP15_1903 at 2013.175 kb on - strand, within HP15_1903 at 2013.220 kb on + strand at 2013.523 kb on - strand, within HP15_1904 at 2013.622 kb on - strand, within HP15_1904 at 2013.624 kb on + strand, within HP15_1904 at 2013.624 kb on + strand, within HP15_1904 at 2013.624 kb on + strand, within HP15_1904 at 2013.624 kb on + strand, within HP15_1904 at 2013.624 kb on + strand, within HP15_1904 at 2013.632 kb on - strand, within HP15_1904 at 2013.632 kb on - strand, within HP15_1904 at 2013.632 kb on - strand, within HP15_1904 at 2013.632 kb on - strand, within HP15_1904 at 2013.652 kb on + strand, within HP15_1904 at 2013.759 kb on + strand, within HP15_1904 at 2013.767 kb on - strand, within HP15_1904 at 2013.778 kb on - strand, within HP15_1904 at 2013.778 kb on - strand, within HP15_1904 at 2013.976 kb on + strand, within HP15_1904 at 2013.984 kb on - strand, within HP15_1904 at 2013.989 kb on - strand, within HP15_1904 at 2014.015 kb on + strand, within HP15_1904 at 2014.173 kb on + strand, within HP15_1904 at 2014.233 kb on + strand, within HP15_1904
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 3 remove 2,011,670 + -0.9 2,011,762 + -0.3 2,011,812 + -0.1 2,012,002 - HP15_1902 0.19 +0.5 2,012,164 - HP15_1902 0.41 -0.8 2,012,340 - HP15_1902 0.64 +0.8 2,012,357 - HP15_1902 0.67 -0.4 2,012,360 - HP15_1902 0.67 +1.8 2,012,444 + HP15_1902 0.78 -0.2 2,012,555 - +0.2 2,012,614 + +1.2 2,012,614 + +0.4 2,012,622 - +0.3 2,012,638 + -1.2 2,012,653 - -0.6 2,012,702 + +0.2 2,012,736 - HP15_1903 0.12 -0.4 2,012,738 + HP15_1903 0.12 +0.2 2,012,751 - HP15_1903 0.14 -2.2 2,012,753 + HP15_1903 0.14 -0.9 2,012,839 - HP15_1903 0.29 -0.3 2,012,918 - HP15_1903 0.42 -1.0 2,013,058 + HP15_1903 0.65 -1.6 2,013,140 + HP15_1903 0.78 -0.7 2,013,175 - HP15_1903 0.84 -0.7 2,013,220 + -0.7 2,013,523 - HP15_1904 0.19 -0.0 2,013,622 - HP15_1904 0.26 -0.1 2,013,624 + HP15_1904 0.26 -1.3 2,013,624 + HP15_1904 0.26 +0.1 2,013,624 + HP15_1904 0.26 -0.3 2,013,624 + HP15_1904 0.26 -0.3 2,013,624 + HP15_1904 0.26 +0.2 2,013,632 - HP15_1904 0.27 +0.9 2,013,632 - HP15_1904 0.27 -0.7 2,013,632 - HP15_1904 0.27 +0.3 2,013,632 - HP15_1904 0.27 +1.9 2,013,652 + HP15_1904 0.28 +1.5 2,013,759 + HP15_1904 0.36 -1.7 2,013,767 - HP15_1904 0.37 +0.4 2,013,778 - HP15_1904 0.38 -0.7 2,013,778 - HP15_1904 0.38 -0.9 2,013,976 + HP15_1904 0.52 -3.0 2,013,984 - HP15_1904 0.53 +0.3 2,013,989 - HP15_1904 0.53 +0.4 2,014,015 + HP15_1904 0.55 +1.0 2,014,173 + HP15_1904 0.67 -0.3 2,014,233 + HP15_1904 0.72 -2.3
Or see this region's nucleotide sequence