Strain Fitness in Marinobacter adhaerens HP15 around HP15_1854

Experiment: monoculture; Experiment B, time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1852 and HP15_1853 are separated by 190 nucleotidesHP15_1853 and HP15_1854 are separated by 27 nucleotidesHP15_1854 and HP15_1855 are separated by 174 nucleotides HP15_1852: HP15_1852 - homoserine kinase, at 1,951,407 to 1,952,063 _1852 HP15_1853: HP15_1853 - phosphoadenosine phosphosulfate reductase, at 1,952,254 to 1,952,976 _1853 HP15_1854: HP15_1854 - transcriptional regulator, LysR family, at 1,953,004 to 1,953,981 _1854 HP15_1855: HP15_1855 - HTH-type transcriptional regulator MalT, at 1,954,156 to 1,956,948 _1855 Position (kb) 1953 1954Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1952.116 kb on - strandat 1952.213 kb on + strandat 1952.251 kb on + strandat 1952.970 kb on + strandat 1952.978 kb on - strandat 1952.978 kb on - strandat 1954.147 kb on + strandat 1954.198 kb on - strandat 1954.246 kb on - strandat 1954.262 kb on - strandat 1954.290 kb on + strandat 1954.393 kb on - strandat 1954.393 kb on - strandat 1954.480 kb on - strand, within HP15_1855at 1954.559 kb on - strand, within HP15_1855at 1954.643 kb on + strand, within HP15_1855at 1954.705 kb on - strand, within HP15_1855at 1954.764 kb on + strand, within HP15_1855at 1954.772 kb on - strand, within HP15_1855at 1954.777 kb on - strand, within HP15_1855at 1954.852 kb on - strand, within HP15_1855at 1954.973 kb on + strand, within HP15_1855

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 3
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1,952,116 - -2.0
1,952,213 + -5.3
1,952,251 + -1.0
1,952,970 + -1.4
1,952,978 - +0.7
1,952,978 - -0.4
1,954,147 + -0.2
1,954,198 - +0.4
1,954,246 - -0.0
1,954,262 - +0.7
1,954,290 + -0.4
1,954,393 - +0.5
1,954,393 - -2.1
1,954,480 - HP15_1855 0.12 -0.4
1,954,559 - HP15_1855 0.14 +0.1
1,954,643 + HP15_1855 0.17 +0.8
1,954,705 - HP15_1855 0.20 +1.1
1,954,764 + HP15_1855 0.22 -0.4
1,954,772 - HP15_1855 0.22 +1.0
1,954,777 - HP15_1855 0.22 +1.0
1,954,852 - HP15_1855 0.25 +1.7
1,954,973 + HP15_1855 0.29 +0.5

Or see this region's nucleotide sequence