Strain Fitness in Marinobacter adhaerens HP15 around HP15_1755

Experiment: monoculture; Experiment B, time point 3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_1753 and HP15_1754 are separated by 10 nucleotidesHP15_1754 and HP15_1755 are separated by 164 nucleotidesHP15_1755 and HP15_1756 are separated by 0 nucleotides HP15_1753: HP15_1753 - conserved hypothetical protein, secreted, at 1,852,369 to 1,852,842 _1753 HP15_1754: HP15_1754 - rRNA (guanine-N1-)-methyltransferase A, predicted, at 1,852,853 to 1,853,638 _1754 HP15_1755: HP15_1755 - electron transfer flavoprotein subunit alpha, at 1,853,803 to 1,854,744 _1755 HP15_1756: HP15_1756 - electron transfer flavoprotein, beta subunit, at 1,854,745 to 1,855,494 _1756 Position (kb) 1853 1854 1855Strain fitness (log2 ratio) -1 0 1at 1852.815 kb on + strandat 1852.816 kb on + strandat 1852.823 kb on - strandat 1852.824 kb on - strandat 1852.871 kb on + strandat 1852.879 kb on - strandat 1852.907 kb on + strandat 1852.938 kb on - strand, within HP15_1754at 1852.967 kb on - strand, within HP15_1754at 1852.993 kb on - strand, within HP15_1754at 1853.066 kb on + strand, within HP15_1754at 1853.274 kb on + strand, within HP15_1754at 1853.579 kb on - strandat 1853.633 kb on + strandat 1853.641 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 3
remove
1,852,815 + -0.9
1,852,816 + +1.0
1,852,823 - +0.2
1,852,824 - -1.2
1,852,871 + +1.4
1,852,879 - -0.2
1,852,907 + +0.7
1,852,938 - HP15_1754 0.11 -0.4
1,852,967 - HP15_1754 0.15 +0.2
1,852,993 - HP15_1754 0.18 -0.4
1,853,066 + HP15_1754 0.27 -0.8
1,853,274 + HP15_1754 0.54 +1.0
1,853,579 - -1.6
1,853,633 + -0.2
1,853,641 - +1.3

Or see this region's nucleotide sequence