Experiment: monoculture; Experiment B, time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1525 and HP15_1527 are separated by 54 nucleotides HP15_1527 and HP15_1526 overlap by 24 nucleotides HP15_1526 and HP15_1528 are separated by 59 nucleotides HP15_1528 and HP15_1529 are separated by 42 nucleotides
HP15_1525: HP15_1525 - succinyl-CoA synthetase, alpha subunit, at 1,607,786 to 1,608,658
_1525
HP15_1527: HP15_1527 - hypothetical protein, at 1,608,713 to 1,608,841
_1527
HP15_1526: HP15_1526 - tryptophanyl-tRNA synthetase, at 1,608,818 to 1,609,993
_1526
HP15_1528: HP15_1528 - chromosome segregation and condensation protein ScpA, at 1,610,053 to 1,610,886
_1528
HP15_1529: HP15_1529 - transcriptional regulator, at 1,610,929 to 1,611,567
_1529
Position (kb) 1608
1609
1610 Strain fitness (log2 ratio) -2
-1
0
1 at 1610.195 kb on + strand, within HP15_1528 at 1610.203 kb on - strand, within HP15_1528 at 1610.532 kb on - strand, within HP15_1528 at 1610.564 kb on + strand, within HP15_1528 at 1610.798 kb on + strand, within HP15_1528 at 1610.808 kb on + strand at 1610.946 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 3 remove 1,610,195 + HP15_1528 0.17 -1.1 1,610,203 - HP15_1528 0.18 -1.2 1,610,532 - HP15_1528 0.57 +1.3 1,610,564 + HP15_1528 0.61 -0.1 1,610,798 + HP15_1528 0.89 +0.2 1,610,808 + -1.9 1,610,946 + +0.9
Or see this region's nucleotide sequence