Experiment: monoculture; Experiment B, time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1435 and HP15_1436 are separated by 61 nucleotides HP15_1436 and HP15_1437 are separated by 59 nucleotides HP15_1437 and HP15_1438 are separated by 138 nucleotides HP15_1438 and HP15_1439 overlap by 17 nucleotides
HP15_1435: HP15_1435 - thioesterase superfamily protein, at 1,513,360 to 1,513,839
_1435
HP15_1436: HP15_1436 - protein containing DUF1330, at 1,513,901 to 1,514,191
_1436
HP15_1437: HP15_1437 - transcriptional regulator, LysR family protein, at 1,514,251 to 1,515,096
_1437
HP15_1438: HP15_1438 - NAD(P)H dehydrogenase (quinone), at 1,515,235 to 1,515,954
_1438
HP15_1439: HP15_1439 - CMP/dCMP deaminase, zinc-binding protein, at 1,515,938 to 1,516,417
_1439
Position (kb) 1514
1515
1516 Strain fitness (log2 ratio) -2
-1
0
1 at 1513.417 kb on - strand, within HP15_1435 at 1513.486 kb on - strand, within HP15_1435 at 1513.626 kb on - strand, within HP15_1435 at 1513.683 kb on + strand, within HP15_1435 at 1513.691 kb on + strand, within HP15_1435 at 1513.691 kb on - strand, within HP15_1435 at 1513.691 kb on - strand, within HP15_1435 at 1513.734 kb on + strand, within HP15_1435 at 1513.759 kb on + strand, within HP15_1435 at 1513.801 kb on - strand at 1513.912 kb on + strand at 1513.983 kb on - strand, within HP15_1436 at 1514.052 kb on - strand, within HP15_1436 at 1514.089 kb on + strand, within HP15_1436 at 1514.155 kb on + strand, within HP15_1436 at 1514.163 kb on - strand at 1514.216 kb on - strand at 1514.257 kb on + strand at 1514.340 kb on + strand, within HP15_1437 at 1514.497 kb on - strand, within HP15_1437 at 1514.667 kb on + strand, within HP15_1437 at 1514.756 kb on + strand, within HP15_1437 at 1514.788 kb on + strand, within HP15_1437 at 1514.813 kb on - strand, within HP15_1437 at 1515.428 kb on - strand, within HP15_1438 at 1515.438 kb on + strand, within HP15_1438 at 1515.438 kb on + strand, within HP15_1438 at 1515.439 kb on - strand, within HP15_1438 at 1515.446 kb on - strand, within HP15_1438 at 1515.446 kb on - strand, within HP15_1438 at 1515.487 kb on - strand, within HP15_1438 at 1515.495 kb on - strand, within HP15_1438 at 1515.510 kb on + strand, within HP15_1438 at 1515.510 kb on + strand, within HP15_1438 at 1515.518 kb on - strand, within HP15_1438 at 1515.520 kb on + strand, within HP15_1438 at 1515.545 kb on - strand, within HP15_1438 at 1515.700 kb on + strand, within HP15_1438 at 1515.756 kb on + strand, within HP15_1438 at 1515.756 kb on + strand, within HP15_1438 at 1515.756 kb on + strand, within HP15_1438 at 1515.764 kb on - strand, within HP15_1438 at 1515.781 kb on + strand, within HP15_1438 at 1515.799 kb on - strand, within HP15_1438 at 1515.802 kb on - strand, within HP15_1438 at 1515.892 kb on - strand at 1515.892 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 3 remove 1,513,417 - HP15_1435 0.12 -0.9 1,513,486 - HP15_1435 0.26 +1.0 1,513,626 - HP15_1435 0.55 -0.4 1,513,683 + HP15_1435 0.67 +1.0 1,513,691 + HP15_1435 0.69 -0.9 1,513,691 - HP15_1435 0.69 +0.1 1,513,691 - HP15_1435 0.69 -0.8 1,513,734 + HP15_1435 0.78 +0.3 1,513,759 + HP15_1435 0.83 +1.5 1,513,801 - -1.1 1,513,912 + -1.5 1,513,983 - HP15_1436 0.28 -0.1 1,514,052 - HP15_1436 0.52 -0.2 1,514,089 + HP15_1436 0.65 -1.3 1,514,155 + HP15_1436 0.87 +0.6 1,514,163 - +1.5 1,514,216 - -0.9 1,514,257 + +0.5 1,514,340 + HP15_1437 0.11 -1.2 1,514,497 - HP15_1437 0.29 -1.7 1,514,667 + HP15_1437 0.49 +0.6 1,514,756 + HP15_1437 0.60 -0.8 1,514,788 + HP15_1437 0.63 -0.1 1,514,813 - HP15_1437 0.66 -2.3 1,515,428 - HP15_1438 0.27 -1.8 1,515,438 + HP15_1438 0.28 +0.7 1,515,438 + HP15_1438 0.28 +1.3 1,515,439 - HP15_1438 0.28 -0.1 1,515,446 - HP15_1438 0.29 +0.0 1,515,446 - HP15_1438 0.29 +1.0 1,515,487 - HP15_1438 0.35 -0.1 1,515,495 - HP15_1438 0.36 +0.0 1,515,510 + HP15_1438 0.38 -1.6 1,515,510 + HP15_1438 0.38 -0.4 1,515,518 - HP15_1438 0.39 -0.1 1,515,520 + HP15_1438 0.40 -0.2 1,515,545 - HP15_1438 0.43 -1.1 1,515,700 + HP15_1438 0.65 -0.2 1,515,756 + HP15_1438 0.72 -0.1 1,515,756 + HP15_1438 0.72 +0.2 1,515,756 + HP15_1438 0.72 +0.9 1,515,764 - HP15_1438 0.73 +1.1 1,515,781 + HP15_1438 0.76 -1.0 1,515,799 - HP15_1438 0.78 +0.9 1,515,802 - HP15_1438 0.79 +0.2 1,515,892 - +0.7 1,515,892 - -0.9
Or see this region's nucleotide sequence