Experiment: monoculture; Experiment B, time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_135 and HP15_136 are separated by 75 nucleotides HP15_136 and HP15_137 are separated by 57 nucleotides HP15_137 and HP15_138 are separated by 45 nucleotides
HP15_135: HP15_135 - von Willebrand factor, type A-like protein, at 141,139 to 142,911
_135
HP15_136: HP15_136 - conserved hypothetical protein, at 142,987 to 143,280
_136
HP15_137: HP15_137 - hypothetical protein, at 143,338 to 143,526
_137
HP15_138: HP15_138 - protein containing Phage P4 alpha, zinc-binding domain, at 143,572 to 144,687
_138
Position (kb)
143
144 Strain fitness (log2 ratio)
-2
-1
0
1 at 142.398 kb on + strand, within HP15_135 at 142.542 kb on - strand, within HP15_135 at 142.633 kb on + strand, within HP15_135 at 142.638 kb on + strand, within HP15_135 at 142.658 kb on - strand, within HP15_135 at 142.687 kb on - strand, within HP15_135 at 142.806 kb on - strand at 142.845 kb on - strand at 142.847 kb on + strand at 143.020 kb on + strand, within HP15_136 at 143.032 kb on + strand, within HP15_136 at 143.032 kb on + strand, within HP15_136 at 143.212 kb on - strand, within HP15_136 at 143.227 kb on - strand, within HP15_136 at 143.251 kb on + strand at 143.295 kb on + strand at 143.302 kb on + strand at 143.303 kb on - strand at 143.310 kb on + strand at 143.310 kb on - strand at 143.327 kb on + strand at 143.330 kb on - strand at 143.336 kb on + strand at 143.439 kb on + strand, within HP15_137 at 143.520 kb on - strand at 143.562 kb on + strand at 143.564 kb on + strand at 143.569 kb on + strand at 143.577 kb on - strand at 143.593 kb on + strand at 143.593 kb on + strand at 143.601 kb on - strand at 143.601 kb on - strand at 143.658 kb on + strand at 143.677 kb on - strand at 143.688 kb on + strand, within HP15_138 at 143.688 kb on - strand, within HP15_138 at 143.710 kb on - strand, within HP15_138 at 143.747 kb on - strand, within HP15_138 at 143.954 kb on + strand, within HP15_138 at 143.954 kb on + strand, within HP15_138 at 143.967 kb on + strand, within HP15_138 at 143.975 kb on - strand, within HP15_138 at 143.980 kb on - strand, within HP15_138 at 143.990 kb on - strand, within HP15_138 at 143.990 kb on - strand, within HP15_138 at 144.052 kb on + strand, within HP15_138 at 144.067 kb on - strand, within HP15_138 at 144.298 kb on + strand, within HP15_138 at 144.298 kb on + strand, within HP15_138 at 144.478 kb on + strand, within HP15_138 at 144.501 kb on - strand, within HP15_138
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 3 remove 142,398 + HP15_135 0.71 -0.5 142,542 - HP15_135 0.79 +1.0 142,633 + HP15_135 0.84 -0.9 142,638 + HP15_135 0.85 +0.2 142,658 - HP15_135 0.86 -0.7 142,687 - HP15_135 0.87 +0.4 142,806 - +1.0 142,845 - -0.2 142,847 + -0.8 143,020 + HP15_136 0.11 -0.3 143,032 + HP15_136 0.15 +0.3 143,032 + HP15_136 0.15 -2.3 143,212 - HP15_136 0.77 +0.3 143,227 - HP15_136 0.82 +0.0 143,251 + -0.1 143,295 + -2.2 143,302 + -1.7 143,303 - -0.2 143,310 + -1.3 143,310 - -0.1 143,327 + +0.4 143,330 - -0.3 143,336 + -0.7 143,439 + HP15_137 0.53 -1.8 143,520 - -1.9 143,562 + +0.2 143,564 + +0.0 143,569 + -1.0 143,577 - -0.8 143,593 + +0.8 143,593 + -0.8 143,601 - -0.0 143,601 - -0.9 143,658 + -1.1 143,677 - +1.2 143,688 + HP15_138 0.10 -0.2 143,688 - HP15_138 0.10 -2.2 143,710 - HP15_138 0.12 +0.7 143,747 - HP15_138 0.16 -0.8 143,954 + HP15_138 0.34 +0.4 143,954 + HP15_138 0.34 +0.7 143,967 + HP15_138 0.35 -1.1 143,975 - HP15_138 0.36 -0.1 143,980 - HP15_138 0.37 -1.8 143,990 - HP15_138 0.37 +0.7 143,990 - HP15_138 0.37 +0.1 144,052 + HP15_138 0.43 +0.3 144,067 - HP15_138 0.44 -1.1 144,298 + HP15_138 0.65 +0.1 144,298 + HP15_138 0.65 +0.3 144,478 + HP15_138 0.81 -0.2 144,501 - HP15_138 0.83 -0.3
Or see this region's nucleotide sequence