Experiment: monoculture; Experiment B, time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_962 and HP15_963 are separated by 208 nucleotides HP15_963 and HP15_964 are separated by 83 nucleotides HP15_964 and HP15_965 are separated by 102 nucleotides HP15_965 and HP15_966 are separated by 66 nucleotides
HP15_962: HP15_962 - orf153EGC121-like protein, at 977,827 to 978,132
_962
HP15_963: HP15_963 - conserved hypothetical protein, at 978,341 to 978,550
_963
HP15_964: HP15_964 - conserved hypothetical protein, at 978,634 to 979,386
_964
HP15_965: HP15_965 - hypothetical protein, at 979,489 to 979,923
_965
HP15_966: HP15_966 - ABC transporter related protein, at 979,990 to 980,289
_966
Position (kb) 978
979
980 Strain fitness (log2 ratio) -2
-1
0
1
2 at 977.715 kb on + strand at 977.723 kb on - strand at 977.777 kb on + strand at 977.777 kb on + strand at 977.785 kb on - strand at 977.792 kb on - strand at 977.840 kb on - strand at 977.900 kb on - strand, within HP15_962 at 977.905 kb on - strand, within HP15_962 at 977.915 kb on - strand, within HP15_962 at 977.964 kb on + strand, within HP15_962 at 978.028 kb on + strand, within HP15_962 at 978.028 kb on + strand, within HP15_962 at 978.029 kb on - strand, within HP15_962 at 978.029 kb on - strand, within HP15_962 at 978.036 kb on - strand, within HP15_962 at 978.074 kb on + strand, within HP15_962 at 978.215 kb on + strand at 978.358 kb on + strand at 978.400 kb on + strand, within HP15_963 at 978.467 kb on + strand, within HP15_963 at 978.467 kb on + strand, within HP15_963 at 978.467 kb on + strand, within HP15_963 at 978.475 kb on - strand, within HP15_963 at 978.475 kb on - strand, within HP15_963 at 978.475 kb on - strand, within HP15_963 at 978.475 kb on - strand, within HP15_963 at 978.475 kb on - strand, within HP15_963 at 978.475 kb on - strand, within HP15_963 at 978.485 kb on - strand, within HP15_963 at 978.509 kb on - strand, within HP15_963 at 978.613 kb on + strand at 978.863 kb on + strand, within HP15_964 at 978.890 kb on + strand, within HP15_964 at 978.955 kb on + strand, within HP15_964 at 979.120 kb on + strand, within HP15_964 at 979.151 kb on - strand, within HP15_964 at 979.182 kb on + strand, within HP15_964 at 979.230 kb on - strand, within HP15_964 at 979.438 kb on - strand at 979.517 kb on - strand at 979.525 kb on + strand at 979.537 kb on + strand, within HP15_965 at 979.557 kb on + strand, within HP15_965 at 979.597 kb on + strand, within HP15_965 at 979.605 kb on - strand, within HP15_965 at 979.658 kb on - strand, within HP15_965 at 979.725 kb on - strand, within HP15_965 at 979.808 kb on + strand, within HP15_965 at 979.821 kb on - strand, within HP15_965 at 979.935 kb on - strand at 980.176 kb on - strand, within HP15_966 at 980.177 kb on + strand, within HP15_966 at 980.185 kb on - strand, within HP15_966 at 980.371 kb on + strand at 980.371 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 2 remove 977,715 + +1.5 977,723 - -0.1 977,777 + +1.8 977,777 + +0.6 977,785 - -0.6 977,792 - -0.2 977,840 - -1.0 977,900 - HP15_962 0.24 +0.0 977,905 - HP15_962 0.25 +0.4 977,915 - HP15_962 0.29 +1.2 977,964 + HP15_962 0.45 +0.1 978,028 + HP15_962 0.66 -0.6 978,028 + HP15_962 0.66 +0.8 978,029 - HP15_962 0.66 +0.5 978,029 - HP15_962 0.66 -0.4 978,036 - HP15_962 0.68 +0.5 978,074 + HP15_962 0.81 +1.0 978,215 + +0.5 978,358 + -0.4 978,400 + HP15_963 0.28 -1.3 978,467 + HP15_963 0.60 -2.4 978,467 + HP15_963 0.60 -0.0 978,467 + HP15_963 0.60 +1.1 978,475 - HP15_963 0.64 +1.0 978,475 - HP15_963 0.64 +1.7 978,475 - HP15_963 0.64 +0.0 978,475 - HP15_963 0.64 +0.4 978,475 - HP15_963 0.64 -0.1 978,475 - HP15_963 0.64 -0.9 978,485 - HP15_963 0.69 +0.0 978,509 - HP15_963 0.80 +0.3 978,613 + -0.5 978,863 + HP15_964 0.30 +0.4 978,890 + HP15_964 0.34 -1.9 978,955 + HP15_964 0.43 -0.6 979,120 + HP15_964 0.65 -1.0 979,151 - HP15_964 0.69 -0.1 979,182 + HP15_964 0.73 +0.5 979,230 - HP15_964 0.79 -1.0 979,438 - +0.2 979,517 - -0.3 979,525 + -0.8 979,537 + HP15_965 0.11 +0.6 979,557 + HP15_965 0.16 +1.3 979,597 + HP15_965 0.25 -1.7 979,605 - HP15_965 0.27 +0.0 979,658 - HP15_965 0.39 +0.0 979,725 - HP15_965 0.54 +0.1 979,808 + HP15_965 0.73 +0.9 979,821 - HP15_965 0.76 -0.0 979,935 - -0.6 980,176 - HP15_966 0.62 -0.2 980,177 + HP15_966 0.62 +0.1 980,185 - HP15_966 0.65 -0.0 980,371 + -0.7 980,371 + +0.6
Or see this region's nucleotide sequence